YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220956962, gi...
Organism:	synthetic construct
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220956962, gi....

Description	E-value	Query Range	Subject Range
gi\|115978404, gi... - gi\|72111474\|ref\|XP_801807.1\| PREDICTED: similar to small nuclear ribonucleoprotein E isoform 2 [Stro...	100.0	[0..1]	[91..1]
SNRPEL1 - small nuclear ribonucleoprotein polypeptide E-like 1	100.0	[0..1]	[90..1]
gi\|55632867 - gi\|55632867\|ref\|XP_520443.1\| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like 1 [Pan tr...	99.0	[0..1]	[90..1]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	99.0	[0..2]	[89..180]
gi\|50728518 - gi\|50728518\|ref\|XP_416157.1\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	99.0	[0..4]	[89..196]
gi\|110759899 - gi\|110759899\|ref\|XP_001119876.1\| PREDICTED: similar to CG18591-PA [Apis mellifera]	98.0	[0..1]	[91..1]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	98.0	[0..2]	[89..137]
gi\|27707378, gi\|... - gi\|62667426\|ref\|XP_341121.2\| PREDICTED: similar to small nuclear ribonucleoprotein E [Rattus norvegi...	97.0	[0..1]	[90..1]
gi\|125985901, gi... - gi\|54645039\|gb\|EAL33779.1\| GA15004-PA [Drosophila pseudoobscura], gi\|125985901\|ref\|XP_001356714.1\| G...	97.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKGNPKVQ KVMVQPINLI FRYLQNRSRV QVWLYENISL RIEGHIVGFD EYMNLVLDDA  60
   61 EEVYVKTRQR RNLGRIMLKG DNITLIQNVS PTKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.221849
Match:	1i81A
Description:	Archaeal homoheptameric Sm protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: