Protein: | gi|190406384 |
Organism: | Saccharomyces cerevisiae RM11-1a |
Length: | 210 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190406384.
Description | E-value | Query Range |
Subject Range |
|
1.0E-43 | [1..210] | [1..210] |
|
2.0E-35 | [2..207] | [12..204] |
|
8.0E-35 | [2..207] | [12..204] |
|
8.0E-34 | [2..209] | [12..199] |
|
2.0E-33 | [28..210] | [101..292] |
|
1.0E-32 | [1..201] | [1..223] |
Region A: Residues: [1-101] |
1 11 21 31 41 51 | | | | | | 1 MNKIPIKDLL NPQITDEFKS SILDINKKLF SICCNLPKLP ESVTTEEEVE LRDILGFLSR 60 61 ANKNRKISDE EKKLLQTTSQ LTTTITVLLK EMRSIENDRS N |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.994 | 0.031 | regulation of transcription, mating-type specific | a.47.2 | t-snare proteins |
Region A: Residues: [102-210] |
1 11 21 31 41 51 | | | | | | 1 YQLTQKNKSA DGLVFNVVTQ DMINKSTKPY RGHRFTKENV RILESWFAKN IENPYLDTKG 60 61 LENLMKNTSL SRIQIKNWVS NRRRKEKTIT IAPELADLLS GEPLAKKKE |
Detection Method: | |
Confidence: | 399.522879 |
Match: | 1mnmC_ |
Description: | mat alpha2 Homeodomain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
binding | 3.02779747447702 | bayes_pls_golite062009 |
sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
protein binding | 0.830419844171551 | bayes_pls_golite062009 |
transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |