YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194042565
Organism:	Sus scrofa
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194042565.

Description	E-value	Query Range	Subject Range
TOM20_MOUSE - Mitochondrial import receptor subunit TOM20 homolog OS=Mus musculus GN=Tomm20 PE=1 SV=1 TOM20_RAT - Mitochondrial import receptor subunit TOM20 homolog OS=Rattus norvegicus GN=Tomm20 PE=1 SV=2	1.0E-57	[1..145]	[1..145]
gi\|1838935 - gi\|1838935\|dbj\|BAA09714.1\| mitochondrial precursor receptor [Rattus sp.]	2.0E-57	[1..145]	[1..145]
gi\|76676674 - gi\|76676674\|ref\|XP_870365.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM20 homol...	3.0E-57	[1..145]	[1..145]
gi\|48145553 - gi\|48145553\|emb\|CAG32999.1\| TOMM20 [Homo sapiens]	4.0E-57	[1..145]	[1..145]
TOM20_RAT, OM20_RAT - Mitochondrial import receptor subunit TOM20 homolog - Rattus norvegicus (Rat), (Q62760) Mitochondria...	6.0E-57	[1..145]	[1..145]
gi\|109085461 - gi\|109085461\|ref\|XP_001094304.1\| PREDICTED: translocase of outer mitochondrial membrane 20 homolog (...	7.0E-56	[1..145]	[1..145]
gi\|50797812 - gi\|50797812\|ref\|XP_423972.1\| PREDICTED: similar to Mitochondrial import receptor subunit TOM20 homol...	1.0E-55	[1..145]	[74..218]
TOM20_XENTR - Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus tropicalis GN=tomm20 PE=2 SV=1	7.0E-54	[1..145]	[3..147]
TOM20_XENLA - Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus laevis GN=tomm20 PE=2 SV=1	3.0E-53	[2..145]	[4..147]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGRNSAIAA GVCGALFIGY CIYFDRKRRS DPNFKNRLRE RRKKQKLAKE RAGLSKLPDL  60
   61 KDAEAVQKFF LEEIQLGEEL LAQGEYEKGV DHLTNAIAVC GQPQQLLQVL QQTLPPPVFQ 120
  121 MLLTKLPTIS QRIVSAQSLA EDDVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	1om2A
Description:	Mitochondrial import receptor subunit Tom20
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.462235200884662	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: