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View Structure Prediction Details

Protein: STR6_ARATH
Organism: Arabidopsis thaliana
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STR6_ARATH.

Description E-value Query
Range
Subject
Range
gi|30681061 - gi|30681061|ref|NP_849624.1| unknown protein [Arabidopsis thaliana]
467.0 [0..1] [581..1]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTSSCGDHE KQRIEDEEQY GVLLYYKYTS VPDLDELVSF YESSCNSLGL LGRVRLSPKG  60
   61 VNVTVGGKLT ALEEHIAAAK SNCLFEGTDF KLASCHHPLN DKVAEECGFT SLSIRVVEEL 120
  121 VTFSPCP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 1v3zA
Description: Crystal Structure of Acylphosphatase from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.34848252540106 bayes_pls_golite062009
catalytic activity 0.310199228219135 bayes_pls_golite062009
hydrolase activity 0.271940296026722 bayes_pls_golite062009
protein binding 0.151377339372032 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.0595404840031094 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.0590584113406907 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [128-332]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLKPPEISNA GKHLSAAEFH SVLQSANGKS ENKELVLLDA RNLYETRIGK FESENVETLD  60
   61 PEIRQYSDLP TWIDQNAEKM KGKNVLMYCT GGIRCEMASA YIRSKGAGFE NTFQLYGGIQ 120
  121 RYLEQFPSGG FFKGKNFVFD HRISVGSSKE DIIGSCLLCN NTFDDYSPRC RCRLCRMLVL 180
  181 VCNHCRVKGD IYICELCRKH GKGEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 2ifdA
Description: No description for 2ifdA was found.

Predicted Domain #3
Region A:
Residues: [333-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLSLDPLNQP SESNGDNTRR KLRILCLHGF RQNASSFKGR TGSLAKKLKN IAELVFIDAP  60
   61 HELQFIYQTA TPPSGVCNKK FAWLVSSDFD KPSETGWTVA QCQFDPLQYQ TQTEGFDKSL 120
  121 TYLKTAFEEK GPFDGILGFS QGAAMAAAVC GKQEQLVGEI DFRFCVLCSG FTPWPLLEMK 180
  181 EKRSIKCPSL HIFGSQPGKD RQIVTQASSD LAGLFEDGCA TIVEHDFGHI IPTKSPYIDE 240
  241 IKAFLYQFI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1fj2A
Description: Acyl protein thioesterase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 0.900012765484033 bayes_pls_golite062009
catalytic activity 0.629869101256762 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.475177657121888 bayes_pls_golite062009
binding 0.424949448217625 bayes_pls_golite062009
carboxylesterase activity 0.0264147222103929 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle