YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194203950, gi...
Organism:	Drosophila simulans
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194203950, gi....

Description	E-value	Query Range	Subject Range
gi\|115956863, gi... - gi\|115956863\|ref\|XP_001190124.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi...	112.0	[0..1]	[65..1]
gi\|45268967 - gi\|45268967\|gb\|AAS55896.1\| 40S ribosomal protein S28 [Sus scrofa]	111.0	[0..3]	[65..18]
gi\|46108760, gi\|... - gi\|46108760\|ref\|XP_381438.1\| hypothetical protein FG01262.1 [Gibberella zeae PH-1], gi\|42547728\|gb\|E...	110.0	[0..3]	[62..6]
gi\|209737176, gi... - gi\|223672277\|gb\|ACN12320.1\| 40S ribosomal protein S28 [Salmo salar], gi\|223646430\|gb\|ACN09973.1\| 40S... gi\|229366522 - gi\|229366522\|gb\|ACQ58241.1\| 40S ribosomal protein S28 [Anoplopoma fimbria] gi\|124300845 - gi\|124300845\|dbj\|BAF45918.1\| ribosomal protein S28 [Solea senegalensis] gi\|225711112 - gi\|225711112\|gb\|ACO11402.1\| 40S ribosomal protein S28 [Caligus rogercresseyi] gi\|225716510 - gi\|225716510\|gb\|ACO14101.1\| 40S ribosomal protein S28 [Esox lucius] RS28_ICTPU - 40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1 RS28_DANRE - 40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1	107.0	[0..3]	[65..7]
gi\|32400865 - gi\|32400865\|gb\|AAP80664.1\|AF479045_1 S28 ribosomal protein [Triticum aestivum]	107.0	[0..1]	[65..22]
gi\|82895184, gi\|... - gi\|94373777\|ref\|XP_996233.1\| PREDICTED: similar to 40S ribosomal protein S28 [Mus musculus], gi\|8289...	107.0	[0..3]	[65..7]
gi\|62858613, gi\|... - gi\|62858613\|ref\|NP_001016950.1\| hypothetical protein LOC549704 [Xenopus (Silurana) tropicalis], gi\|1... gi\|71051186, gi\|... - gi\|71051186\|gb\|AAH99294.1\| MGC85550 protein [Xenopus laevis], gi\|51873955\|gb\|AAH78605.1\| MGC85550 pr...	107.0	[0..3]	[65..7]
gi\|61369337 - gi\|61369337\|gb\|AAX43319.1\| ribosomal protein S28 [synthetic construct]	106.0	[0..3]	[65..7]
gi\|47216403 - gi\|47216403\|emb\|CAG01954.1\| unnamed protein product [Tetraodon nigroviridis]	106.0	[0..3]	[65..7]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKPVVWARV MKVLGRTGSQ GQCTQVKVEF LGEQNRQIIR NVKGPVREGD ILTLLESERE  60
   61 ARRLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1ne3A
Description:	Solution structure of ribosomal protein S28E from Methanobacterium Thermoautotrophicum. Ontario Centre for Structural Proteomics target MTH0256_1_68; Northeast Structural Genomics Target TT744
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: