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View Structure Prediction Details

Protein: gi|167424969, gi...
Organism: Yersinia pestis biovar Mediaevalis str. K1973002
Length: 218 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167424969, gi....

Description E-value Query
Range
Subject
Range
gi|152961617, gi... - gi|77629375|ref|ZP_00791961.1| COG0307: Riboflavin synthase alpha chain [Yersinia pseudotuberculosis...
4.0E-87 [1..218] [1..218]
gi|145598059, gi... - gi|145598059|ref|YP_001162135.1| riboflavin synthase subunit alpha [Yersinia pestis Pestoides F], gi...
Q66A28|Q66A28_YERPS - Riboflavin synthase alpha chain - Yersinia pseudotuberculosis
gi|51589910, gi|... - gi|51596628|ref|YP_070819.1| riboflavin synthase subunit alpha [Yersinia pseudotuberculosis IP 32953...
gi|186895684, gi... - gi|186895684|ref|YP_001872796.1| riboflavin synthase subunit alpha [Yersinia pseudotuberculosis PB1/...
1.0E-86 [1..218] [1..218]
gi|238787134, gi... - gi|77975295|ref|ZP_00830831.1| COG0307: Riboflavin synthase alpha chain [Yersinia frederiksenii ATCC...
4.0E-81 [1..216] [1..216]
gi|238796360, gi... - gi|77961726|ref|ZP_00825558.1| COG0307: Riboflavin synthase alpha chain [Yersinia mollaretii ATCC 43...
6.0E-81 [1..216] [1..216]
gi|238716500, gi... - gi|77959197|ref|ZP_00823219.1| COG0307: Riboflavin synthase alpha chain [Yersinia bercovieri ATCC 43...
2.0E-79 [1..216] [1..216]
gi|238792300, gi... - gi|77979571|ref|ZP_00834989.1| COG0307: Riboflavin synthase alpha chain [Yersinia intermedia ATCC 29...
4.0E-79 [1..212] [1..213]
gi|26108314, gi|... - gi|26247911|ref|NP_753951.1| riboflavin synthase subunit alpha [Escherichia coli CFT073], gi|2610831...
gi|190906311, gi... - gi|75238779|ref|ZP_00722763.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli F11], gi|1...
gi|110343377, gi... - gi|110641785|ref|YP_669515.1| riboflavin synthase subunit alpha [Escherichia coli 536], gi|110343377...
gi|227837099, gi... - gi|227885920|ref|ZP_04003725.1| riboflavin synthase subunit alpha [Escherichia coli 83972], gi|22783...
1.0E-78 [1..206] [1..206]
gi|187733834, gi... - gi|75175189|ref|ZP_00695507.1| COG0307: Riboflavin synthase alpha chain [Shigella boydii BS512], gi|...
gi|75190701, gi|... - gi|75190701|ref|ZP_00703968.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli E24377A], ...
gi|83584597, gi|... - gi|83584597|ref|ZP_00923267.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli 101-1], gi...
gi|193071595, gi... - gi|75214854|ref|ZP_00713337.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli E110019], ...
gi|190904078, gi... - gi|75230890|ref|ZP_00717339.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli B7A], gi|1...
gi|157161128, gi... - gi|75195741|ref|ZP_00705811.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli HS], gi|15...
gi|194415998, gi... - gi|75212998|ref|ZP_00712996.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli B171], gi|...
gi|218427171, gi... - gi|218689607|ref|YP_002397819.1| riboflavin synthase subunit alpha [Escherichia coli ED1a], gi|21842...
gi|218351957, gi... - gi|218695225|ref|YP_002402892.1| riboflavin synthase subunit alpha [Escherichia coli 55989], gi|2183...
gi|218699770, gi... - gi|218699770|ref|YP_002407399.1| riboflavin synthase subunit alpha [Escherichia coli IAI39], gi|2183...
gi|218432259, gi... - gi|218705162|ref|YP_002412681.1| riboflavin synthase subunit alpha [Escherichia coli UMN026], gi|218...
gi|115512968, gi... - gi|117623844|ref|YP_852757.1| riboflavin synthase subunit alpha [Escherichia coli APEC O1], gi|11551...
gi|124531607, gi... - gi|124531607|ref|ZP_01701818.1| riboflavin synthase, alpha subunit [Escherichia coli B], gi|12449846...
gi|89108504, gi|... - gi|89108504|ref|AP_002284.1| riboflavin synthase, alpha subunit [Escherichia coli str. K-12 substr. ...
gi|91210876, gi|... - gi|91210876|ref|YP_540862.1| riboflavin synthase subunit alpha [Escherichia coli UTI89], gi|91072450...
RISA_ECOLI - Riboflavin synthase alpha chain (EC 2.5.1.9) - Escherichia coli
gi|110615188, gi... - gi|110805640|ref|YP_689160.1| riboflavin synthase subunit alpha [Shigella flexneri 5 str. 8401], gi|...
gi|237705610, gi... - gi|237705610|ref|ZP_04536091.1| riboflavin synthase subunit alpha [Escherichia sp. 3_2_53FAA], gi|22...
EG11406 - riboflavin synthase, alpha subunit / Riboflavin synthase; homotrimer; associated with RibE 60-mer
gi|238900879, gi... - gi|238900879|ref|YP_002926675.1| riboflavin synthase, alpha subunit [Escherichia coli BW2952], gi|23...
gi|251785119, gi... - gi|251785119|ref|YP_002999423.1| hypothetical protein B21_01623 [Escherichia coli BL21], gi|24237739...
gi|253773379, gi... - gi|254288514|ref|YP_003054262.1| riboflavin synthase subunit alpha [Escherichia coli BL21(DE3)], gi|...
gi|254161725, gi... - gi|254161725|ref|YP_003044833.1| riboflavin synthase subunit alpha [Escherichia coli B str. REL606],...
gi|30063178, gi|... - gi|30063178|ref|NP_837349.1| riboflavin synthase subunit alpha [Shigella flexneri 2a str. 2457T], gi...
EG11406 - riboflavin synthase, alpha subunit / Riboflavin synthase; homotrimer; associated with RibE 60-mer
RISA_SHIFL - Riboflavin synthase OS=Shigella flexneri GN=ribE PE=3 SV=1
gi|24113052, gi|... - gi|24113052|ref|NP_707562.1| riboflavin synthase subunit alpha [Shigella flexneri 2a str. 301], gi|2...
gi|169754914, gi... - gi|170019986|ref|YP_001724940.1| riboflavin synthase subunit alpha [Escherichia coli ATCC 8739], gi|...
gi|169889159, gi... - gi|170081324|ref|YP_001730644.1| riboflavin synthase, alpha subunit [Escherichia coli str. K-12 subs...
gi|170521426, gi... - gi|170683708|ref|YP_001743590.1| riboflavin synthase, alpha subunit [Escherichia coli SMS-3-5], gi|1...
gi|209918977, gi... - gi|209918977|ref|YP_002293061.1| riboflavin synthase subunit alpha [Escherichia coli SE11], gi|20991...
gi|215264911, gi... - gi|215486839|ref|YP_002329270.1| riboflavin synthase subunit alpha [Escherichia coli O127:H6 str. E2...
gi|218554230, gi... - gi|218554230|ref|YP_002387143.1| riboflavin synthase subunit alpha [Escherichia coli IAI1], gi|21836...
gi|218365302, gi... - gi|218558533|ref|YP_002391446.1| riboflavin synthase subunit alpha [Escherichia coli S88], gi|218365...
gi|73855488, gi|... - gi|74312011|ref|YP_310430.1| riboflavin synthase subunit alpha [Shigella sonnei Ss046], gi|73855488|...
gi|81241286, gi|... - gi|82777138|ref|YP_403487.1| riboflavin synthase subunit alpha [Shigella dysenteriae Sd197], gi|8124...
gi|192927457, gi... - gi|75257081|ref|ZP_00728641.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli E22], gi|1...
gi|188490072, gi... - gi|75512904|ref|ZP_00735385.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli 53638], gi...
gi|81245379, gi|... - gi|82543968|ref|YP_407915.1| riboflavin synthase subunit alpha [Shigella boydii Sb227], gi|81245379|...
2.0E-78 [1..206] [1..206]
gi|15831625, gi|... - gi|15831625|ref|NP_310398.1| riboflavin synthase subunit alpha [Escherichia coli O157:H7], gi|133618...
gi|188013792, gi... - gi|188013792|gb|EDU51914.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4113...
gi|25287076, gi|... - pir||G85773 riboflavin synthase, alpha chain [imported] - Escherichia coli (strain O157:H7, substrai...
gi|12515660, gi|... - gi|15802076|ref|NP_288098.1| riboflavin synthase subunit alpha [Escherichia coli O157:H7 EDL933], gi...
gi|195940242 - gi|195940242|ref|ZP_03085624.1| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. EC4...
gi|168802902, gi... - gi|189375261|gb|EDU93677.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC508]...
gi|168783936, gi... - gi|188998810|gb|EDU67796.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4076...
gi|189359620, gi... - gi|189359620|gb|EDU78039.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4486...
gi|15831625, gi|... - gi|15831625|ref|NP_310398.1| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. Sakai]...
gi|217318076, gi... - gi|217328729|ref|ZP_03444810.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. TW...
gi|209158023, gi... - gi|209396623|ref|YP_002270732.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. E...
gi|208738300, gi... - gi|208818177|ref|ZP_03258497.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC...
gi|208731032, gi... - gi|208816689|ref|ZP_03257809.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC...
gi|254592681, gi... - gi|254793281|ref|YP_003078118.1| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. T...
3.0E-78 [1..206] [1..206]
gi|37526501, gi|... - gi|37526501|ref|NP_929845.1| riboflavin synthase subunit alpha [Photorhabdus luminescens subsp. laum...
7.0E-78 [1..204] [1..204]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVQGTG LVVAIEEKSN FRTHVVELPI DMLPELALGA SVAHNGCCLT VTHIEGNRVS  60
   61 FDLMKETLRL TNLGDINVGD KVNLERAAKF SDEIGGHLMS GHIICTAEIA KIYTSENNRQ 120
  121 IWFRMPSEDL MKYVLHKGFI GIDGISLTIG EVVGNRFCVH LIPETLSRTT LGKKRLGHRV 180
  181 NIEIDPQTQA VVDTVERVLA QRNIANAALV DEKFVRVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.0
Match: 1i8dA
Description: Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin synthase activity 5.11500941509376 bayes_pls_golite062009
catalytic activity 2.05427820269334 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
binding 0.534066059984103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle