YRC Public Data Repository - Protein Structure Prediction

Protein:	CINAL_ECODH
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CINAL_ECODH.

Description	E-value	Query Range	Subject Range
CINAL_ECOHS - CinA-like protein OS=Escherichia coli O9:H4 (strain HS) GN=EcHS_A2392 PE=3 SV=1	336.0	[0..1]	[400..1]
gi\|26109042, gi\|... - gi\|26248637\|ref\|NP_754677.1\| competence damage-inducible protein A [Escherichia coli CFT073], gi\|261... gi\|190909811, gi... - gi\|75243064\|ref\|ZP_00726770.1\| COG1058: Predicted nucleotide-utilizing enzyme related to molybdopter... gi\|237704727, gi... - gi\|237704727\|ref\|ZP_04535208.1\| competence damage-inducible protein CinA [Escherichia sp. 3_2_53FAA]... gi\|227835658, gi... - gi\|227887308\|ref\|ZP_04005113.1\| competence damage-inducible protein A [Escherichia coli 83972], gi\|2... gi\|91073117, gi\|... - gi\|91211543\|ref\|YP_541529.1\| competence damage-inducible protein A [Escherichia coli UTI89], gi\|9107... gi\|117624442, gi... - gi\|117624442\|ref\|YP_853355.1\| competence damage-inducible protein A [Escherichia coli APEC O1], gi\|1... gi\|218690412, gi... - gi\|218690412\|ref\|YP_002398624.1\| competence damage-inducible protein A [Escherichia coli ED1a], gi\|2...	335.0	[0..1]	[400..1]
gi\|192958481, gi... - gi\|75238037\|ref\|ZP_00722042.1\| COG1058: Predicted nucleotide-utilizing enzyme related to molybdopter...	335.0	[0..1]	[400..1]
gi\|157158520, gi... - gi\|75187035\|ref\|ZP_00700302.1\| COG1058: Predicted nucleotide-utilizing enzyme related to molybdopter...	334.0	[0..1]	[400..1]
gi\|218361576, gi... - gi\|218554808\|ref\|YP_002387721.1\| competence damage-inducible protein A [Escherichia coli IAI1], gi\|2... gi\|75259712, gi\|... - gi\|75259712\|ref\|ZP_00731014.1\| COG1058: Predicted nucleotide-utilizing enzyme related to molybdopter... gi\|75230365, gi\|... - gi\|75230365\|ref\|ZP_00716855.1\| COG1058: Predicted nucleotide-utilizing enzyme related to molybdopter...	333.0	[0..1]	[400..1]
gi\|24052683, gi\|... - gi\|24113625\|ref\|NP_708135.1\| competence damage-inducible protein A [Shigella flexneri 2a str. 301], ... gi\|30063680, gi\|... - gi\|30063680\|ref\|NP_837851.1\| competence damage-inducible protein A [Shigella flexneri 2a str. 2457T]... CINAL_SHIFL - CinA-like protein OS=Shigella flexneri GN=SF2328 PE=3 SV=1	333.0	[0..1]	[400..1]
gi\|254593544, gi... - gi\|254794144\|ref\|YP_003078981.1\| hypothetical protein ECSP_3126 [Escherichia coli O157:H7 str. TW143... gi\|208738435, gi... - gi\|208818312\|ref\|ZP_03258632.1\| CinA family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|208814175, gi... - gi\|208814175\|ref\|ZP_03255504.1\| CinA family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208806502, gi... - gi\|208806502\|ref\|ZP_03248839.1\| CinA family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195935628 - gi\|195935628\|ref\|ZP_03081010.1\| competence damage-inducible protein A [Escherichia coli O157:H7 str.... gi\|25331010, gi\|... - pir\|\|H85864 hypothetical protein Z3507 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|217319511, gi... - gi\|217327144\|ref\|ZP_03443227.1\| CinA family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|209157145, gi... - gi\|209395745\|ref\|YP_002271661.1\| CinA family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|15802798, gi\|... - gi\|15802798\|ref\|NP_288825.1\| competence damage-inducible protein A [Escherichia coli O157:H7 EDL933]... gi\|168761311, gi... - gi\|189368247\|gb\|EDU86663.1\| CinA family protein [Escherichia coli O157:H7 str. EC4501], gi\|168761311... gi\|15832391, gi\|... - gi\|15832391\|ref\|NP_311164.1\| competence damage-inducible protein A [Escherichia coli O157:H7], gi\|13... gi\|189357752, gi... - gi\|189357752\|gb\|EDU76171.1\| CinA family protein [Escherichia coli O157:H7 str. EC4401], gi\|168755002... gi\|168749659, gi... - gi\|188016108\|gb\|EDU54230.1\| CinA family protein [Escherichia coli O157:H7 str. EC4113], gi\|168749659... gi\|168798420, gi... - gi\|189378983\|gb\|EDU97399.1\| CinA family protein [Escherichia coli O157:H7 str. EC508], gi\|168798420\|... gi\|168780105, gi... - gi\|189001924\|gb\|EDU70910.1\| CinA family protein [Escherichia coli O157:H7 str. EC4076], gi\|168780105... gi\|168773024, gi... - gi\|187771213\|gb\|EDU35057.1\| CinA family protein [Escherichia coli O157:H7 str. EC4196], gi\|168773024... gi\|168767876, gi... - gi\|189362965\|gb\|EDU81384.1\| CinA family protein [Escherichia coli O157:H7 str. EC4486], gi\|168767876... gi\|15832391, gi\|... - gi\|15832391\|ref\|NP_311164.1\| competence damage-inducible protein A [Escherichia coli O157:H7 str. Sa...	333.0	[0..1]	[400..1]
gi\|110642457, gi... - gi\|110642457\|ref\|YP_670187.1\| competence damage-inducible protein A [Escherichia coli 536], gi\|11034...	333.0	[0..1]	[400..1]
gi\|73856248, gi\|... - gi\|74312771\|ref\|YP_311190.1\| competence damage-inducible protein A [Shigella sonnei Ss046], gi\|73856...	333.0	[0..1]	[400..1]
gi\|224467749, gi... - gi\|224583222\|ref\|YP_002637020.1\| competence damage-inducible protein A [Salmonella enterica subsp. e... gi\|62128499, gi\|... - gi\|62180866\|ref\|YP_217283.1\| competence damage-inducible protein A [Salmonella enterica subsp. enter... gi\|194401534, gi... - gi\|194442871\|ref\|YP_002041554.1\| competence damage-inducible protein A [Salmonella enterica subsp. e...	326.0	[0..1]	[397..1]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKVEMLSTG DEVLHGQIVD TNAAWLADFF FHQGLPLSRR NTVGDNLDDL VTILRERSQH  60
   61 ADVLIVNGGL GPTSDDLSAL AAATAKGEGL VLHEAWLKEM ERYFHERGRV MAPSNRKQAE 120
  121 LPASAEFINN PVGTACGFAV QLNRCLMFFT PGVPSEFKVM VEHEILPRLR ERFSLPQPPV 180
  181 CLRLTTFGRS ESDLAQSLDT LQLPPGVTMG YRSSMPIIEL KLTGPASEQQ AMEKLWLDVK 240
  241 RVAGQSVIFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2nqqA
Description:	No description for 2nqqA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.9303555688427	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [251-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTEGLPAQIS RELQNRQFSL TLSEQFTGGL LALQLSRAGA PLLACEVVPS QEETLAQTAH  60
   61 WITERRANHF AGLALAVSGF ENEHLNFALA TPDGTFALRV RFSTTRYSLA IRQEVCAMMA 120
  121 LNMLRRWLNG QDIASEHGWI EVVESMTLSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2a9sA
Description:	The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.666293440418936	bayes_pls_golite062009
binding	0.169690822508591	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: