YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170521426, gi...
Organism:	Escherichia coli SMS-3-5
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170521426, gi....

Description	E-value	Query Range	Subject Range
gi\|26108314, gi\|... - gi\|26247911\|ref\|NP_753951.1\| riboflavin synthase subunit alpha [Escherichia coli CFT073], gi\|2610831... gi\|190906311, gi... - gi\|75238779\|ref\|ZP_00722763.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli F11], gi\|1... gi\|110343377, gi... - gi\|110641785\|ref\|YP_669515.1\| riboflavin synthase subunit alpha [Escherichia coli 536], gi\|110343377... gi\|227837099, gi... - gi\|227885920\|ref\|ZP_04003725.1\| riboflavin synthase subunit alpha [Escherichia coli 83972], gi\|22783...	304.0	[0..1]	[213..1]
gi\|15831625, gi\|... - gi\|15831625\|ref\|NP_310398.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7], gi\|133618... gi\|188013792, gi... - gi\|188013792\|gb\|EDU51914.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4113... gi\|25287076, gi\|... - pir\|\|G85773 riboflavin synthase, alpha chain [imported] - Escherichia coli (strain O157:H7, substrai... gi\|12515660, gi\|... - gi\|15802076\|ref\|NP_288098.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 EDL933], gi... gi\|195940242 - gi\|195940242\|ref\|ZP_03085624.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. EC4... gi\|168802902, gi... - gi\|189375261\|gb\|EDU93677.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC508]... gi\|168783936, gi... - gi\|188998810\|gb\|EDU67796.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4076... gi\|189359620, gi... - gi\|189359620\|gb\|EDU78039.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4486... gi\|15831625, gi\|... - gi\|15831625\|ref\|NP_310398.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. Sakai]... gi\|217318076, gi... - gi\|217328729\|ref\|ZP_03444810.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. TW... gi\|209158023, gi... - gi\|209396623\|ref\|YP_002270732.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. E... gi\|208738300, gi... - gi\|208818177\|ref\|ZP_03258497.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|208731032, gi... - gi\|208816689\|ref\|ZP_03257809.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|254592681, gi... - gi\|254793281\|ref\|YP_003078118.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. T...	301.0	[0..1]	[213..1]
gi\|238792300, gi... - gi\|77979571\|ref\|ZP_00834989.1\| COG0307: Riboflavin synthase alpha chain [Yersinia intermedia ATCC 29...	290.0	[0..1]	[210..1]
gi\|152961617, gi... - gi\|77629375\|ref\|ZP_00791961.1\| COG0307: Riboflavin synthase alpha chain [Yersinia pseudotuberculosis...	289.0	[0..1]	[202..1]
gi\|88796893, gi\|... - gi\|88796893\|ref\|ZP_01112523.1\| riboflavin synthase subunit alpha [Alteromonas macleodii 'Deep ecotyp...	289.0	[0..1]	[208..1]
gi\|70732822, gi\|... - gi\|70732822\|ref\|YP_262589.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf-5], gi\|68...	289.0	[0..1]	[211..1]
gi\|238716500, gi... - gi\|77959197\|ref\|ZP_00823219.1\| COG0307: Riboflavin synthase alpha chain [Yersinia bercovieri ATCC 43...	288.0	[0..1]	[212..1]
gi\|238787134, gi... - gi\|77975295\|ref\|ZP_00830831.1\| COG0307: Riboflavin synthase alpha chain [Yersinia frederiksenii ATCC...	288.0	[0..1]	[212..1]
gi\|48864080, gi\|... - gi\|90023097\|ref\|YP_528924.1\| riboflavin synthase subunit alpha [Saccharophagus degradans 2-40], gi\|8...	288.0	[0..1]	[212..1]
gi\|48728929, gi\|... - gi\|77461239\|ref\|YP_350746.1\| riboflavin synthase subunit alpha [Pseudomonas fluorescens Pf0-1], gi\|7...	287.0	[0..1]	[210..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVQGTA KLVSIDEKPN FRTHVVELPD HMLDGLETGA SVAHNGCCLT VTEINGNHVS  60
   61 FDLMKETLRI TNLGDLKVGD WVNVERAAKF SDEIGGHLMS GHIMTTAEVA KILTSENNRQ 120
  121 IWFKVQDSQL MKYILYKGFI GIDGISLTVG EVTPTRFCVH LIPETLERTT LGKKKLGARV 180
  181 NIEIDPQTQA VVDTVERVLA ARENAMNQPG TEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	1i8dA
Description:	Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
riboflavin synthase activity	5.11500941509376	bayes_pls_golite062009
catalytic activity	2.05427820269334	bayes_pls_golite062009
transferase activity	0.708491789248912	bayes_pls_golite062009
binding	0.534066059984103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: