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View Structure Prediction Details

Protein: gi|188014582, gi...
Organism: Escherichia coli O157:H7 str. EC4113
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188014582, gi....

Description E-value Query
Range
Subject
Range
RRF_ERWCT - Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1
RRF_PECAS - Ribosome-recycling factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=frr PE...
273.0 [0..1] [185..1]
RRF_SALG2 - Ribosome-recycling factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=frr PE=3 SV=1
gi|204927412, gi... - gi|204927412|ref|ZP_03218614.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
gi|200388182, gi... - gi|200388182|ref|ZP_03214794.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALDC - Ribosome-recycling factor OS=Salmonella dublin (strain CT_02021853) GN=frr PE=3 SV=1
gi|213425945 - gi|213425945|ref|ZP_03358695.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1
gi|213416682 - gi|213416682|ref|ZP_03349826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
gi|213163136 - gi|213163136|ref|ZP_03348846.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALEP - Ribosome-recycling factor OS=Salmonella enteritidis PT4 (strain P125109) GN=frr PE=3 SV=1
gi|16759209 - gi|16759209|ref|NP_454826.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ...
RRF_SALHS - Ribosome-recycling factor OS=Salmonella heidelberg (strain SL476) GN=frr PE=3 SV=1
RRF_SALNS - Ribosome-recycling factor OS=Salmonella newport (strain SL254) GN=frr PE=3 SV=1
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=frr PE=...
gi|168823247, gi... - gi|205340485|gb|EDZ27249.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar W...
gi|29136383, gi|... - gi|29140759|ref|NP_804101.1| ribosome recycling factor [Salmonella enterica subsp. enterica serovar ...
gi|195632657, gi... - gi|195632657|gb|EDX51111.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar N...
gi|197240067, gi... - gi|197261812|ref|ZP_03161886.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALA4 - Ribosome-recycling factor OS=Salmonella agona (strain SL483) GN=frr PE=3 SV=1
RRF_SALSV - Ribosome-recycling factor OS=Salmonella schwarzengrund (strain CVM19633) GN=frr PE=3 SV=1
gi|194457134, gi... - gi|194470770|ref|ZP_03076754.1| ribosome releasing factor [Salmonella enterica subsp. enterica serov...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1
RRF_SALPC - Ribosome-recycling factor OS=Salmonella paratyphi C (strain RKS4594) GN=frr PE=3 SV=1
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1
RRF_SALTI - Ribosome-recycling factor OS=Salmonella typhi GN=frr PE=3 SV=1
gi|214000838 - gi|214000838|ref|ZP_03411573.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALTY - Ribosome-recycling factor OS=Salmonella typhimurium GN=frr PE=3 SV=1
gi|213646665 - gi|213646665|ref|ZP_03376718.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
gi|213580802 - gi|213580802|ref|ZP_03362628.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
lcl|NC_016856.1_... - [gene=frr] [protein=ribosome recycling factor] [protein_id=YP_005235890.1] [location=257853..258410]
RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1
RRF_SALAR - Ribosome-recycling factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=frr ...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis GN=frr PE=3 SV=1
gi|205331572, gi... - gi|205331572|gb|EDZ18336.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar 4...
gi|205322189, gi... - gi|205322189|gb|EDZ10028.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S...
gi|168263914, gi... - gi|205347503|gb|EDZ34134.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H...
gi|205336212, gi... - gi|205336212|gb|EDZ22976.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar H...
gi|168234997, gi... - gi|197291879|gb|EDY31229.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar S...
gi|168230526, gi... - gi|205335095|gb|EDZ21859.1| ribosome releasing factor [Salmonella enterica subsp. enterica serovar K...
RRF_SALCH - Ribosome-recycling factor OS=Salmonella choleraesuis (strain SC-B67) GN=frr PE=3 SV=1
gi|238911285 - gi|238911285|ref|ZP_04655122.1| ribosome recycling factor [Salmonella enterica subsp. enterica serov...
RRF_SALPB - Ribosome-recycling factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=frr PE=3 SV=1
268.0 [0..1] [185..1]
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1
RRF_PHOLL - Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...
267.0 [0..1] [185..1]
RRF_YERPG - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1
RRF_YERP3 - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3...
gi|45442572, gi|... - gi|45442572|ref|NP_994111.1| ribosome recycling factor [Yersinia pestis biovar Microtus str. 91001],...
gi|22127009, gi|... - gi|22127009|ref|NP_670432.1| ribosome recycling factor [Yersinia pestis KIM], gi|21960056|gb|AAM8668...
gi|15979114, gi|... - gi|218928215|ref|YP_002346090.1| ribosome recycling factor [Yersinia pestis CO92], gi|16121347|ref|N...
gi|229843077, gi... - gi|229843077|ref|ZP_04463227.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. In...
RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=frr PE=3 SV=...
gi|229840976, gi... - gi|229840976|ref|ZP_04461135.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. PE...
gi|229837754, gi... - gi|229837754|ref|ZP_04457914.1| ribosome recycling factor [Yersinia pestis Pestoides A], gi|22970413...
gi|89105137, gi|... - gi|89105137|ref|ZP_01177662.1| COG0233: Ribosome recycling factor [Yersinia pestis biovar Orientalis...
RRF_YERPS - Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1
RRF_YERPA - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1
RRF_YERPN - Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1
gi|166011931, gi... - gi|166011931|ref|ZP_02232829.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. E1979...
gi|166211643, gi... - gi|166211643|ref|ZP_02237678.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. B4200...
gi|167399872, gi... - gi|167399872|ref|ZP_02305390.1| ribosome recycling factor [Yersinia pestis biovar Antiqua str. UG05-...
gi|167419665, gi... - gi|167419665|ref|ZP_02311418.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. MG...
RRF_YERPP - Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1
gi|167055636, gi... - gi|167425236|ref|ZP_02316989.1| ribosome recycling factor [Yersinia pestis biovar Mediaevalis str. K...
RRF_YERPE - Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1
gi|149366952, gi... - gi|149366952|ref|ZP_01888985.1| ribosome recycling factor [Yersinia pestis CA88-4125], gi|149290566|...
gi|167470429 - gi|167470429|ref|ZP_02335133.1| ribosome recycling factor [Yersinia pestis FV-1]
RRF_YERPY - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=...
RRF_YERPB - Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1
gi|165920967, gi... - gi|165927071|ref|ZP_02222903.1| ribosome recycling factor [Yersinia pestis biovar Orientalis str. F1...
266.0 [0..1] [185..1]
gi|37926485 - gi|37926485|pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Esch...
265.0 [0..1] [185..1]
RRF_LEGPA - Ribosome-recycling factor OS=Legionella pneumophila (strain Paris) GN=frr PE=3 SV=1
265.0 [0..1] [184..1]
RRF_LEGPL - Ribosome-recycling factor OS=Legionella pneumophila (strain Lens) GN=frr PE=3 SV=1
RRF_LEGPC - Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1
RRF_LEGPH - Ribosome-recycling factor OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC...
264.0 [0..1] [184..1]
RRF_SALPK - Ribosome-recycling factor OS=Salmonella paratyphi A (strain AKU_12601) GN=frr PE=3 SV=1
RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=frr PE=3 SV=1
RRF_SALPA - Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1
264.0 [0..1] [185..1]
RRF_COLP3 - Ribosome-recycling factor OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=frr PE=3 SV=1
264.0 [0..1] [184..1]
RRF_HISS2 - Ribosome-recycling factor OS=Histophilus somni (strain 2336) GN=frr PE=3 SV=1
RRF_HAES1 - Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1
264.0 [0..1] [185..1]

Back

Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDIRKDAE VRMDKCVEAF KTQISKIRTG RASPSLLDGI VVEYYGTPTP LRQLASVTVE  60
   61 DSRTLKINVF DRSMSPAVEK AIMASDLGLN PNSAGSDIRV PLPPLTEERR KDLTKIVRGE 120
  121 AEQARVAVRN VRRDANDKVK ALLKDKEISE DDDRRSQDDV QKLTDAAIKK IEAALADKEA 180
  181 ELMQF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.09691
Match: 1ek8A
Description: Ribosome recycling factor, RRF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation regulator activity 4.3587179630028 bayes_pls_golite062009
translation factor activity, nucleic acid binding 4.16037247039451 bayes_pls_golite062009
nucleic acid binding 3.79085926340206 bayes_pls_golite062009
binding 2.89152455528061 bayes_pls_golite062009
translation termination factor activity 2.10810503428749 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle