YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189376426, gi...
Organism:	Escherichia coli O157:H7 str. EC508
Length:	447 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189376426, gi....

Description	E-value	Query Range	Subject Range
gi\|53732854 - gi\|53732854\|ref\|ZP_00155159.2\| COG2256: ATPase related to the helicase subunit of the Holliday junct...	419.0	[0..1]	[447..1]
gi\|46133388 - gi\|46133388\|ref\|ZP_00157116.2\| COG2256: ATPase related to the helicase subunit of the Holliday junct... gi\|145270993, gi... - gi\|145639902\|ref\|ZP_01795502.1\| formyltetrahydrofolate deformylase [Haemophilus influenzae PittII], ... gi\|145627717, gi... - gi\|145627717\|ref\|ZP_01783518.1\| formyltetrahydrofolate deformylase [Haemophilus influenzae 22.1-21],...	418.0	[0..1]	[447..1]
gi\|224467299, gi... - gi\|224582772\|ref\|YP_002636570.1\| hypothetical protein SPC_0962 [Salmonella enterica subsp. enterica ... gi\|207856354, gi... - gi\|207856354\|ref\|YP_002243005.1\| recombination factor protein RarA [Salmonella enterica subsp. enter... gi\|205352170, gi... - gi\|205352170\|ref\|YP_002225971.1\| recombination factor protein RarA [Salmonella enterica subsp. enter... gi\|198244942, gi... - gi\|198244942\|ref\|YP_002214886.1\| putative DNA recombination-associated ATPase RarA [Salmonella enter... gi\|62179486, gi\|... - gi\|62179486\|ref\|YP_215903.1\| recombination factor protein RarA [Salmonella enterica subsp. enterica ...	418.0	[0..1]	[447..1]
gi\|68249823, gi\|... - gi\|68249823\|ref\|YP_248935.1\| recombination factor protein RarA [Haemophilus influenzae 86-028NP], gi...	417.0	[0..1]	[447..1]
gi\|168822938, gi... - gi\|205340727\|gb\|EDZ27491.1\| putative DNA recombination-associated ATPase RarA [Salmonella enterica s... gi\|168466546, gi... - gi\|195630930\|gb\|EDX49516.1\| putative DNA recombination-associated ATPase RarA [Salmonella enterica s... gi\|194406019, gi... - gi\|194447715\|ref\|YP_002044955.1\| recombination factor protein RarA [Salmonella enterica subsp. enter... gi\|194446297, gi... - gi\|194446297\|ref\|YP_002040161.1\| putative DNA recombination-associated ATPase RarA [Salmonella enter... gi\|205334719, gi... - gi\|205334719\|gb\|EDZ21483.1\| putative DNA recombination-associated ATPase RarA [Salmonella enterica s... gi\|167994703, gi... - gi\|205327462\|gb\|EDZ14226.1\| ATPase, AAA family [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|56413986, gi\|... - gi\|56413986\|ref\|YP_151061.1\| recombination factor protein RarA [Salmonella enterica subsp. enterica ... gi\|205347729, gi... - gi\|205347729\|gb\|EDZ34360.1\| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Hadar st... gi\|205339853, gi... - gi\|205339853\|gb\|EDZ26617.1\| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|238913263 - gi\|238913263\|ref\|ZP_04657100.1\| recombination factor protein RarA [Salmonella enterica subsp. enteri... gi\|161364172, gi... - gi\|161614808\|ref\|YP_001588773.1\| recombination factor protein RarA [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=ycaJ] [protein=recombination factor protein RarA] [protein_id=YP_005236676.1] [location=100054... gi\|16502126, gi\|... - gi\|25329900\|pir\|\|AH0611 conserevd hypothetical protein STY0960 [imported] - Salmonella enterica subs... gi\|16759833 - gi\|16759833\|ref\|NP_455450.1\| recombination factor protein RarA [Salmonella enterica subsp. enterica ... gi\|213851471 - gi\|213851471\|ref\|ZP_03381369.1\| recombination factor protein RarA [Salmonella enterica subsp. enteri... gi\|213428592 - gi\|213428592\|ref\|ZP_03361342.1\| recombination factor protein RarA [Salmonella enterica subsp. enteri... gi\|16764323, gi\|... - gi\|16764323\|ref\|NP_459938.1\| recombination factor protein RarA [Salmonella typhimurium LT2], gi\|1641... gi\|29138024, gi\|... - gi\|29142394\|ref\|NP_805736.1\| recombination factor protein RarA [Salmonella enterica subsp. enterica ... gi\|214003462 - gi\|214003462\|ref\|ZP_03414197.1\| recombination factor protein RarA [Salmonella enterica subsp. enteri... gi\|197263317, gi... - gi\|197263317\|ref\|ZP_03163391.1\| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Sain... gi\|194457508, gi... - gi\|194471144\|ref\|ZP_03077128.1\| putative DNA recombination-associated ATPase RarA [Salmonella enteri... gi\|199603472, gi... - gi\|200391027\|ref\|ZP_03217638.1\| ATPase, AAA family [Salmonella enterica subsp. enterica serovar Virc... gi\|197094386, gi... - gi\|197362909\|ref\|YP_002142546.1\| recombination factor protein RarA [Salmonella enterica subsp. enter...	417.0	[0..1]	[447..1]
gi\|187430894, gi... - gi\|75178304\|ref\|ZP_00698358.1\| COG2256: ATPase related to the helicase subunit of the Holliday junct...	415.0	[0..1]	[447..1]
gi\|25329891 - gi\|25329891\|pir\|\|G85614 probable polynucleotide enzyme ycaJ [imported] - Escherichia coli (strain O1... gi\|12514054, gi\|... - gi\|15800755\|ref\|NP_286769.1\| recombination factor protein RarA [Escherichia coli O157:H7 EDL933], gi...	415.0	[0..1]	[447..1]
gi\|193064678, gi... - gi\|75257393\|ref\|ZP_00728909.1\| COG2256: ATPase related to the helicase subunit of the Holliday junct... gi\|194413579, gi... - gi\|75210419\|ref\|ZP_00710575.1\| COG2256: ATPase related to the helicase subunit of the Holliday junct... gi\|218553478, gi... - gi\|218553478\|ref\|YP_002386391.1\| recombination factor protein RarA [Escherichia coli IAI1], gi\|21836...	414.0	[0..1]	[447..1]
gi\|191167587, gi... - gi\|75229260\|ref\|ZP_00715825.1\| COG2256: ATPase related to the helicase subunit of the Holliday junct...	414.0	[0..1]	[447..1]
YCAJ_HAEIN, Y159... - (P45262) Hypothetical protein HI1590, Uncharacterized protein HI1590 - Haemophilus influenzae, Repli... RARA_HAEIN - Replication-associated recombination protein A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11...	414.0	[0..1]	[447..1]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLSLDFSD NTFQPLAARM RPENLAQYIG QQHLLAAGKP LPRAIEAGHL HSMILWGPPG  60
   61 TGKTTLAEVI ARYANADVER ISAVTSGVKE IREAIERARQ NRNAGRRTIL FVDEVHRFNK 120
  121 SQQDAFLPHI EDGTITFIGA TTENPSFELN SALLSRARVY LLKSLSTEDI EQVLTQAMED 180
  181 KTRGYGGQDI VLPDETRRAI AELVNGDARR ALNTLEMMAD MAEVDDSGKR VLKPELLTEI 240
  241 AGERSARFDN KGDRFYDLIS ALHKSVRGSA PDAALYWYAR IITAGGDPLY VARRCLAIAS 300
  301 EDVGNADPRA MQVAIAAWDC FTRVGPAEGE RAIAQAIVYL ACAPKSNAVY TAFKAALADA 360
  361 RERPDYDVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1xxiB
Description:	ADP Bound E. coli Clamp Loader Complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.05015914982969	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity	0.502565068825558	bayes_pls_golite062009
purine ribonucleotide binding	0.337096034207063	bayes_pls_golite062009
ribonucleotide binding	0.33688241622626	bayes_pls_golite062009
purine nucleotide binding	0.335459976383557	bayes_pls_golite062009
nucleotide binding	0.326346376039545	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [370-447]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHLRNAPTKL MKEMGYGQEY RYAHDEANAY AAGEVYFPPE IAQTRYYFPT NRGLEGKIGE  60
   61 KLAWLAEQDQ NSPIKRYR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.30103
Match:	2r9gA
Description:	No description for 2r9gA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: