YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RGP3_ARATH
Organism: Arabidopsis thaliana
Length: 362 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGP3_ARATH.

Description E-value Query
Range
Subject
Range
RGP1_ORYSJ - UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp. japonica GN=UAM1 PE=1 SV=1
gi|10442698 - gi|10442698|gb|AAG17438.1|AF294725_1 reversibly glycosylated polypeptide [Oryza sativa]
608.0 [0..5] [359..9]
gi|110559491 - gi|110559491|gb|ABG76000.1| GRP-like protein 2 [Gossypium hirsutum]
608.0 [0..6] [360..2]
gi|77416931 - gi|77416931|gb|ABA81861.1| UDP-glucose:protein transglucosylase-like [Solanum tuberosum]
607.0 [0..6] [356..4]
gi|4158221 - gi|4158221|emb|CAA77235.1| reversibly glycosylated polypeptide [Oryza sativa (indica cultivar-group)...
606.0 [0..5] [359..9]
gi|6403494 - gi|6403494|gb|AAF07834.1|AC010871_10 putative reversibly glycosylatable polypeptide [Arabidopsis tha...
604.0 [0..1] [362..1]
UPTG_MAIZE - Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2
604.0 [0..6] [359..10]
gi|48478827 - gi|48478827|gb|AAT44738.1| UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Lycopersicon e...
601.0 [0..11] [356..5]
gi|90657535 - gi|90657535|gb|ABD96835.1| hypothetical protein [Cleome spinosa]
598.0 [0..8] [359..12]

Back

Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG  60
   61 FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK YIYTIDDDCF VAKDPTGKEI 120
  121 NALEQHIKNL LSPSTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [137-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFFNTLYDPY RDGADFVRGY PFSMREGAIT AVSHGLWLNI PDYDAPTQLV KP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [189-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEKNSRYVDA VMTIPKGTLF PMCGMNLAFD RELIGPAMYF GLMGDGQPIG RYDDMWAGWC  60
   61 VKVICDHMGW GVKTGLPYIW HSKASNPFVN LKKEYNGIFW QEEAIPFFQS VTLPKECTSV 120
  121 QQCYLELAKL VREKLGKVDP YFITLATGMV TWIEAWEELN SAEGTEAEAP KGKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle