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View Structure Prediction Details

Protein: LA2_ARATH
Organism: Arabidopsis thaliana
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LA2_ARATH.

Description E-value Query
Range
Subject
Range
ELAV4_MOUSE - ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
gi|109475246, gi... - gi|109476911|ref|XP_001063164.1| PREDICTED: similar to ELAV-like protein 4 (Paraneoplastic encephalo...
gi|76614090 - gi|76614090|ref|XP_870192.1| PREDICTED: similar to ELAV-like protein 4 (Paraneoplastic encephalomyel...
ENSOCUP00000013976 - pep:novel chromosome:oryCun2:13:116474176:116574244:-1 gene:ENSOCUG00000016262 transcript:ENSOCUT000...
216.0 [0..22] [357..49]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSFNEETA KKLLTQVEFY FSDSNLPTDG FLNREVTKSK DGLVSLPLVC SFSRMRNLLG  60
   61 LGNINREDIP PRIVEEVANL LRTSDFLKVS NNGQRIGRGT KLSKPEEVLE QVHRRTLAAS 120
  121 PFEYSIKMED VSSFFSQYAK VNSVRLPPNI ADKRRFCGTA LVEFSSEQDT QDILRQSLVY 180
  181 AGADLVLIPK SDFDCQRENM IKQLGKSESH NEFR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.69897
Match: 1cvjA
Description: Poly(A)-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [215-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGQIVKFALK WIASEEKVTN KEKPSALKNK IKEKEDKETG IADREKENGD NSCASLCKDN  60
   61 TDQLVVPPWN NSNSVSSEVL KDLFQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [300-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFGSVEHIEY SGGLDSGYVW FTDSETAMKA RAAVEFVGGL VVKNNFSVAL EAINGEMERE  60
   61 LWKRLSSAEL EGGKEGHKKE KGKDECFENV QPTKKARKEP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1owxA
Description: Lupus LA protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle