YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FH12_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FH12_ARATH.

Description E-value Query
Range
Subject
Range
gi|50938941, gi|... - gi|50938941|ref|XP_478998.1| putative diaphanous homologue [Oryza sativa (japonica cultivar-group)],...
321.0 [0..2] [299..1274]

Back

Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNCEKMLS KIKIPLPDML NAVLDLDSSA VIIDQIKNLI KICWSKEEMD RLRNSAGGDK  60
   61 EVLGKCEEIF GELMMVPRIE PKLRVFAFKV EYPSRVSDLK MWMHTIIAAT KEITGSVKLF 120
  121 RIMQTSLTMQ VLRGSNVECG LDSLVKLCDN VYLMHDFCKL LDFGNDLVHL EAASRIELET 180
  181 ITNKMQELFD IEEEVNDEFL ASENDGANFV GYRNVVHDFL CTIDGDKQLL NILYAEVGGL 240
  241 VNSYIAEYPS GVRFKEATNI LTRFVETFYK SREEIERQAE AEKEILEKRK MNIKQNGNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.221849
Match: 1v9dA
Description: Crystal structure of the core FH2 domain of mouse mDia1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.665995442790395 bayes_pls_golite062009
protein binding 0.52517360209936 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle