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View Structure Prediction Details

Protein: RBP1C_ARATH
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBP1C_ARATH.

Description E-value Query
Range
Subject
Range
gi|73969988 - gi|73969988|ref|XP_531768.2| PREDICTED: similar to RAN-binding protein 2-like 1 isoform 1 [Canis fam...
204.0 [0..3] [213..1285]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTEPEREN REDETEVNED EDTGAQVAPI VRLEEVAVTT GEEDEDAVLD LKSKMYRFDK  60
   61 EGNQWKERGA GTVKLLKHKE TGKVRLVMRQ SKTLKICANH LISSGMSVQE HSGNEKSCLW 120
  121 HATDFSDGEL KDELFCIRFA SIENCKTFME KFTEIAESQQ VGKESTQGDE AAGLIENLSV 180
  181 EENISEEKAK EAEEKEPAKE DKETKKEKVE EEKKTEAST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 1k5dB
Description: Ran-binding protein 1, Ranbp1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.597587183571285 bayes_pls_golite062009
protein binding 0.29116370406325 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle