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View Structure Prediction Details

Protein: gi|88900336, gi|...
Organism: Arabidopsis thaliana
Length: 95 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88900336, gi|....

Description E-value Query
Range
Subject
Range
gi|45593274 - gi|45593274|gb|AAS68185.1| lipid transfer-like protein [Brassica napus var. napus]
110.0 [0..1] [95..1]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKLMVIT VVIVVMSSPI LIKSEVSSSC IPTELMPCLP AMTTGGQPTK DCCDKLIEQK  60
   61 ECLCGYINNP LYSTFVSSPV ARKVLEVCNI PYPSC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1n89A
Description: Non-specific lipid-transfer protein homologue (ns-LTP2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.619696930993462 bayes_pls_golite062009
lipid binding 0.426912810837979 bayes_pls_golite062009
transporter activity 0.166266607468725 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle