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View Structure Prediction Details

Protein: gi|30688625
Organism: Arabidopsis thaliana
Length: 499 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30688625.

Description E-value Query
Range
Subject
Range
GLPK_CARHZ - Glycerol kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=gl...
467.0 [0..10] [499..1]

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Predicted Domain #1
Region A:
Residues: [1-499]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAELNPFP SRSVFLGVDV GTGSARAGLF DDNGKLLGSA TSPIQIWKDG DCIEQSSTDI  60
   61 WHAVCAAVKS ACSLANVSDV EVKGIGFAAT CSLVAVDAEG SPVTVSWSGD SRRNIIVWMD 120
  121 HRAVKQAERI NSFNSPVLQY CGGGVSPEME PPKLLWVKEN LKESWSMVYK WMDLSDWLSY 180
  181 RATGDDTRSL CTTVCKWTYL GHAHMHQMTE KASRDMEACG WDDEFWEEIG LGDLVDGHHA 240
  241 KIGRSVAFPG HPLGNGLTAT AAKELGLLAG TPVGTSLIDA HAGGVGVMEK SDVDTLCSRM 300
  301 VLVCGTSTCH MAVSREKLFI PGVWGPFWSA MVPEYWLTEG GQSATGALLD HIIENHVASP 360
  361 RLANRAASQK VSVFELLNNI LKTMAEDTSS PFISALTSDM HILPDFHGNR SPVADPNSKG 420
  421 VIFGMSLDTS EKQLALLYLA TIQGIAYGTR HIVEHCNTHG HKIDTLLACG GLSKNPLFIQ 480
  481 EHADIVVRLF FLEKASLFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 124.0
Match: 1bo5O
Description: Glycerol kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glycerol kinase activity 5.25911418019759 bayes_pls_golite062009
carbohydrate kinase activity 2.33338276303563 bayes_pls_golite062009
binding 1.92007657015464 bayes_pls_golite062009
hexokinase activity 1.70516840340504 bayes_pls_golite062009
glucose binding 1.31275520745982 bayes_pls_golite062009
protein binding 0.856838411407636 bayes_pls_golite062009
glucokinase activity 0.47468456642723 bayes_pls_golite062009
kinase activity 0.460541310603011 bayes_pls_golite062009
sugar binding 0.44352406324938 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.381597272143844 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.324655711623803 bayes_pls_golite062009
catalytic activity 0.296484721581333 bayes_pls_golite062009
monosaccharide binding 0.13988576633855 bayes_pls_golite062009
nucleic acid binding 0.132883501060045 bayes_pls_golite062009
hydrolase activity 0.13181840194556 bayes_pls_golite062009
transferase activity 0.105619024604158 bayes_pls_golite062009
transcription regulator activity 0.0477755517373659 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle