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View Structure Prediction Details

Protein: gi|222423104, gi...
Organism: Arabidopsis thaliana
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222423104, gi....

Description E-value Query
Range
Subject
Range
gi|109511369, gi... - gi|109514150|ref|XP_001067329.1| PREDICTED: similar to High mobility group protein 4 (HMG-4) (High m...
160.0 [0..2] [140..405]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF  60
   61 FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK APYEEKAAKR KAEYEKQMDA 120
  121 YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD 180
  181 DEEED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.221849
Match: 2gzkA
Description: No description for 2gzkA was found.

Predicted functions:

Term Confidence Notes
binding 0.927928103499335 bayes_pls_golite062009
nucleic acid binding 0.38664561645052 bayes_pls_golite062009
DNA binding 0.37554038880732 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle