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View Structure Prediction Details

Protein: 2A5Z_ARATH
Organism: Arabidopsis thaliana
Length: 546 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 2A5Z_ARATH.

Description E-value Query
Range
Subject
Range
gi|109486753, gi... - gi|109486753|ref|XP_001065844.1| PREDICTED: similar to delta isoform of regulatory subunit B56, prot...
833.0 [0..8] [541..75]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKQIFGKLP RKPSKSLQND SNGEGGVNNS YYASNSSTTS ISKPSSTSSK SSSASGSRVA  60
   61 NGTLAPNSMS SNRNTNQGKK PLGGDAVVQA GPFP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [95-546]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGGVYEALP SFRDVPISEK PNLFIGKLSM CCVVFDFSDP SKNLKEKEIK RQTLLELVDY  60
   61 VASVGFKFND VSMQELTKMV AVNLFRTFPS ANHESKILEI HDMDDEEPSL EPAWPHVQVV 120
  121 YEILLRFVAS PMTDAKLAKR YIDHSFVLKL LDLFDSEDQR EREYLKTILH RVYGKFMVHR 180
  181 PYIRKAINNI FYRFISETEK HNGIAELLEI LGSIINGFAL PLKEEHKLFL LRALIPLHKP 240
  241 KCSSVYHQQL SYCIVQFVEK DFKLADTVIR GLLKYWPVTN SSKEVMFLGE LEEVLEATQA 300
  301 AEFQRCMVPL SRQIARCLNS SHFQVAERAL FLWNNDHIRN LITQNHKVIM PIVFPALERN 360
  361 TRGHWNQAVQ SLTINVRKVL CEIDQVLFDE CLAKFQVEEV NKTEVKAKRE RTWQRLEDLA 420
  421 TSKTVVTNEA VLVPRFVSSV NLTTSSSEST GS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 1.2838670704442 bayes_pls_golite062009
protein binding 0.624843978607333 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle