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View Structure Prediction Details

Protein: BAM7_ARATH
Organism: Arabidopsis thaliana
Length: 691 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAM7_ARATH.

Description E-value Query
Range
Subject
Range
gi|110742879 - gi|110742879|dbj|BAE99337.1| putative beta-amylase [Arabidopsis thaliana]
1063.0 [0..1] [691..1]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATDMHKLLG TSEEDDDEEM DMDVKEEDDG DRRNRDKHAA SGSSSNDEFM FQQSMQDQVG  60
   61 TPGGGGSRRS RPLEEKERTK LRERHRRAIT ARILGGLRRH GNYNLRVRAD INDVIAALAR 120
  121 EAGWVVLPDG TTFPSKSQGT KPTGGSSAVA AGSSASHIAS QQTSPPALRV VSSGLRSPVE 180
  181 LSSCRMKGVF TPAPSPYDML PIQSPELVGS VNKAEGLVGC SVDVINSKQI LEIP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 87.318759
Match: PF05687.4
Description: No description for PF05687.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [235-691]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNLTEQDFSG TPYVPVYVML PLGVINMKCE LADRDGLLKH LRILKSIHVD GVKVDCWWGI  60
   61 VEGHSPQEYN WTGYRQLFQM VRDLNLKIQV LMSFHECGGN VGDDVCIPLP HWVAEIGRTN 120
  121 PDIYFTDREG RRNPECLSWG IDKERILRGR TALEVYFDYM RSFRIELAEF LEDGVISMVE 180
  181 IGLGPCGELR YPSCPIKHGW RYPGVGEFQC YDKYLSKSLR KAAESRGHLF WARGPDNTGS 240
  241 YNSQPQGTGF FCDGGDYDGL YGRFFLKWYS QVLIDHADQI LCLAKLVFDS SCIAAKLPDV 300
  301 HWWYRTASHA AELTAGFYNP SNRDGYSAIA STLKKHGATL SFVSGEVQVL NRPDDFSGAL 360
  361 GEPEAVAWQV LNAAWDSGTP VARENSLACH DRVGYNKMLE SVKFRNDPDR KHLSSFAYSR 420
  421 LVPALMEGHN IVEFERFVKK LHGEAVMNHH HHHHQQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1ukoA
Description: Crystal structure of soybean beta-amylase mutant substituted at surface region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.32563207632796 bayes_pls_golite062009
hydrolase activity 0.85514037342026 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 0.80912338090552 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 0.41375210927547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle