YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4558276, gi\|4...
Organism:	Escherichia coli
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4558276, gi|4....

Description	E-value	Query Range	Subject Range
gi\|76797419, gi\|... - gi\|76797419\|ref\|ZP_00779738.1\| regulatory protein, LacI:Periplasmic binding protein/LacI transcripti... gi\|241882990, gi... - gi\|241904637\|ref\|ZP_04789316.1\| transcriptional regulator, LacI family [Thermoanaerobacter brockii s...	264.0	[0..2]	[254..61]
gi\|167038831, gi... - gi\|167038831\|ref\|YP_001661816.1\| periplasmic binding protein/LacI transcriptional regulator [Thermoa... gi\|242258204, gi... - gi\|242258204\|ref\|ZP_04803030.1\| transcriptional regulator, LacI family [Thermoanaerobacter sp. X513]...	262.0	[0..2]	[254..61]
gi\|83745729, gi\|... - gi\|83745729\|ref\|ZP_00942786.1\| Transcriptional regulator, LacI family [Ralstonia solanacearum UW551]... gi\|207743639, gi... - gi\|207743639\|ref\|YP_002260031.1\| transcriptional regulatory dna-binding repressor protein [Ralstonia...	260.0	[0..1]	[255..58]
gi\|20515183, gi\|... - gi\|20806727\|ref\|NP_621898.1\| transcriptional regulator [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20806727 - gi\|20806727\|ref\|NP_621898.1\| Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi\|254478068, gi... - gi\|254478068\|ref\|ZP_05091451.1\| Periplasmic binding proteins and sugar binding domain of the LacI fa...	260.0	[0..2]	[254..61]
gi\|51891908, gi\|... - gi\|51891908\|ref\|YP_074599.1\| LacI family transcriptional repressor [Symbiobacterium thermophilum IAM...	260.0	[0..2]	[254..58]
gi\|17428027 - gi\|17428027\|emb\|CAD14716.1\| probable transcriptional regulatory dna-binding repressor transcription ... gi\|17545733 - gi\|17545733\|ref\|NP_519135.1\| transcriptional regulatory DNA-binding repressor transcription regulato...	258.0	[0..1]	[255..58]
gi\|82401152, gi\|... - gi\|82500860\|ref\|ZP_00886253.1\| regulatory protein, LacI [Caldicellulosiruptor saccharolyticus DSM 89...	256.0	[0..1]	[254..68]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDKVVAIIVT RLDSLSENLA VQTMLPAFYE QGYDPIMMES QFSPQLVAEH LGVLKRRNID  60
   61 GVVLFGFTGI TEEMLAHWQS SLVLLARDAK GFASVCYDDE GAIKILMQRL YDQGHRNISY 120
  121 LGVPHSDVTT GKRRHEAYLA FCKAHKLHPV AALPGLAMKQ GYENVAKVIT PETTALLCAT 180
  181 DTLALGASKY LQEQRIDTLQ LASVGNTPLM KFLHPEIVTV DPGYAEAGRQ AACQLIAQVT 240
  241 GRSEPQQIII PATLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	1bykA
Description:	Trehalose repressor, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.22720925836419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: