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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.674365748405]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.1194E-3 2 211 2 6292
TRAMP complex 1.2712E-3 2 4 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ncRNA 3'-end processing 3.3348E-6 2 12 2 6292
snoRNA metabolic process 7.7306E-6 2 18 2 6292
RNA 3'-end processing 4.3504E-5 2 42 2 6292
rRNA metabolic process 4.7071E-4 2 137 2 6292
ncRNA processing 1.1624E-3 2 215 2 6292
tRNA catabolic process 1.2712E-3 2 4 1 6292
snRNA catabolic process 1.5888E-3 2 5 1 6292
snoRNA catabolic process 1.5888E-3 2 5 1 6292
snoRNA 3'-end processing 1.5888E-3 2 5 1 6292
ncRNA metabolic process 1.6621E-3 2 257 2 6292
ncRNA polyadenylation 1.9064E-3 2 6 1 6292
ncRNA catabolic process 1.9064E-3 2 6 1 6292
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process 1.9064E-3 2 6 1 6292
rRNA catabolic process 1.9064E-3 2 6 1 6292
snoRNA processing 2.224E-3 2 7 1 6292
polyadenylation-dependent RNA catabolic process 2.5415E-3 2 8 1 6292
polyadenylation-dependent ncRNA catabolic process 2.5415E-3 2 8 1 6292
snRNA metabolic process 2.859E-3 2 9 1 6292
RNA processing 3.6384E-3 2 380 2 6292
rRNA modification 5.7138E-3 2 18 1 6292
RNA methylation 6.0308E-3 2 19 1 6292
RNA polyadenylation 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

polynucleotide adenylyltransferase activity 1.9064E-3 2 6 1 6292
adenylyltransferase activity 4.1283E-3 2 13 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle