From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.711225036902] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
vacuolar proton-transporting V-type ATPase, V0 domain | 2.224E-3 | 2 | 7 | 1 | 6292 |
proton-transporting V-type ATPase, V0 domain | 2.224E-3 | 2 | 7 | 1 | 6292 |
vacuolar proton-transporting V-type ATPase complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
proton-transporting V-type ATPase complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
proton-transporting two-sector ATPase complex, proton-transporting domain | 6.0308E-3 | 2 | 19 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
mannoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
mannoprotein metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
cell wall glycoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
cell wall mannoprotein biosynthetic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
cell wall macromolecule biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
cellular component macromolecule biosynthetic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
cellular cell wall macromolecule metabolic process | 7.2981E-3 | 2 | 23 | 1 | 6292 |
cell wall macromolecule metabolic process | 7.6148E-3 | 2 | 24 | 1 | 6292 |
pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
intracellular pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
vacuolar acidification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
regulation of intracellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
regulation of cellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
active transmembrane transporter activity | 3.6682E-4 | 2 | 121 | 2 | 6292 |
acidic amino acid transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
L-glutamate transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
L-aspartate transmembrane transporter activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
L-amino acid transmembrane transporter activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |