| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.053] [SVM Score: 0.715791492838] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| ubiquitin ligase complex | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| nuclear SCF ubiquitin ligase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| SCF ubiquitin ligase complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| cullin-RING ubiquitin ligase complex | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| nuclear ubiquitin ligase complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein ubiquitination | 1.051E-4 | 2 | 65 | 2 | 6292 |
| protein modification by small protein conjugation | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| protein modification by small protein conjugation or removal | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| centromere complex assembly | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| kinetochore assembly | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| kinetochore organization | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| response to cadmium ion | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 2.224E-3 | 2 | 7 | 1 | 6292 |
| cyclic-nucleotide-mediated signaling | 2.224E-3 | 2 | 7 | 1 | 6292 |
| cAMP-mediated signaling | 2.224E-3 | 2 | 7 | 1 | 6292 |
| response to arsenic | 2.859E-3 | 2 | 9 | 1 | 6292 |
| post-translational protein modification | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| response to metal ion | 5.7138E-3 | 2 | 18 | 1 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
| second-messenger-mediated signaling | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chaperone binding | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| protein binding | 9.4468E-3 | 2 | 612 | 2 | 6292 |