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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.757143094815]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

citrate metabolic process 3.0316E-7 2 4 2 6292
glutamate biosynthetic process 3.9411E-6 2 13 2 6292
glutamate metabolic process 7.7306E-6 2 18 2 6292
glutamine family amino acid biosynthetic process 1.9099E-5 2 28 2 6292
glutamine family amino acid metabolic process 4.5626E-5 2 43 2 6292
cellular amino acid biosynthetic process 3.2544E-4 2 114 2 6292
amine biosynthetic process 3.7294E-4 2 122 2 6292
organic acid biosynthetic process 4.846E-4 2 139 2 6292
carboxylic acid biosynthetic process 4.846E-4 2 139 2 6292
cellular amino acid metabolic process 9.9543E-4 2 199 2 6292
cellular amine metabolic process 1.2395E-3 2 222 2 6292
glyoxylate cycle 1.2712E-3 2 4 1 6292
amine metabolic process 1.4856E-3 2 243 2 6292
cellular amino acid and derivative metabolic process 1.4856E-3 2 243 2 6292
cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
glyoxylate metabolic process 1.5888E-3 2 5 1 6292
small molecule biosynthetic process 2.42E-3 2 310 2 6292
organic acid metabolic process 2.793E-3 2 333 2 6292
oxoacid metabolic process 2.793E-3 2 333 2 6292
carboxylic acid metabolic process 2.793E-3 2 333 2 6292
cellular ketone metabolic process 3.0157E-3 2 346 2 6292
tricarboxylic acid cycle 4.7627E-3 2 15 1 6292
acetyl-CoA catabolic process 4.7627E-3 2 15 1 6292
acetyl-CoA metabolic process 6.3477E-3 2 20 1 6292
coenzyme catabolic process 6.3477E-3 2 20 1 6292
cellular aldehyde metabolic process 6.6645E-3 2 21 1 6292
cofactor catabolic process 6.9813E-3 2 22 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

citrate (Si)-synthase activity 1.5158E-7 2 3 2 6292
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 2.2737E-6 2 10 2 6292
transferase activity, transferring acyl groups 2.8654E-4 2 107 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle