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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.818027945344]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
CYC3
  • mitochondrial intermembrane space
  • mitochondrion
    		•
  • cytochrome c-heme linkage
    		•
  • holocytochrome-c synthase activity
    		•
    CYT2
  • mitochondrial intermembrane space
  • mitochondrion
    		•
  • cytochrome c-heme linkage
    		•
  • holocytochrome-c synthase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial intermembrane space 3.1832E-5 2 36 2 6292
    organelle envelope lumen 3.9411E-5 2 40 2 6292
    mitochondrial envelope 2.4514E-3 2 312 2 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    organelle envelope 6.43E-3 2 505 2 6292
    envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein-heme linkage 3.0316E-7 2 4 2 6292
    protein-tetrapyrrole linkage 3.0316E-7 2 4 2 6292
    cytochrome c-heme linkage 3.0316E-7 2 4 2 6292
    cytochrome complex assembly 7.579E-7 2 6 2 6292
    cellular protein complex assembly 7.2304E-5 2 54 2 6292
    protein complex assembly 6.0304E-4 2 155 2 6292
    protein complex biogenesis 6.0304E-4 2 155 2 6292
    cellular macromolecular complex assembly 8.3223E-4 2 182 2 6292
    cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
    macromolecular complex assembly 1.9877E-3 2 281 2 6292
    post-translational protein modification 3.2108E-3 2 357 2 6292
    macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
    cellular component assembly 3.7349E-3 2 385 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    holocytochrome-c synthase activity 5.0527E-8 2 2 2 6292
    carbon-sulfur lyase activity 2.2737E-6 2 10 2 6292
    lyase activity 1.9342E-4 2 88 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle