| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.82263475341] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| trans-Golgi network transport vesicle | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phospholipid transport | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| lipid transport | 3.3651E-5 | 2 | 37 | 2 | 6292 |
| lipid localization | 3.744E-5 | 2 | 39 | 2 | 6292 |
| phosphatidylinositol metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| phospholipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| lipid translocation | 2.224E-3 | 2 | 7 | 1 | 6292 |
| phosphatidylcholine metabolic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
| ethanolamine and derivative metabolic process | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
| Golgi to plasma membrane transport | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phospholipid transporter activity | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| lipid transporter activity | 8.6401E-6 | 2 | 19 | 2 | 6292 |
| phosphatidylinositol transporter activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
| phospholipid-translocating ATPase activity | 2.859E-3 | 2 | 9 | 1 | 6292 |
| transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| ATPase activity, coupled to transmembrane movement of ions | 9.1975E-3 | 2 | 29 | 1 | 6292 |