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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.892317768713]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
MRS3
  • mitochondrion
    		•
  • RNA splicing
  • mitochondrial transport
  • mitochondrial iron ion transport
    		•
  • iron ion transmembrane transporter activity
  • surfactant activity
    		•
    MRS4
  • mitochondrion
    		•
  • RNA splicing
  • mitochondrial transport
  • mitochondrial iron ion transport
    		•
  • iron ion transmembrane transporter activity
  • surfactant activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial iron ion transport 5.0527E-8 2 2 2 6292
    iron ion transport 7.7306E-6 2 18 2 6292
    di-, tri-valent inorganic cation transport 2.5061E-5 2 32 2 6292
    transition metal ion transport 4.5626E-5 2 43 2 6292
    metal ion transport 8.3521E-5 2 58 2 6292
    mitochondrial transport 1.0838E-4 2 66 2 6292
    cation transport 2.256E-4 2 95 2 6292
    ion transport 3.6076E-4 2 120 2 6292
    RNA splicing 4.3685E-4 2 132 2 6292
    RNA processing 3.6384E-3 2 380 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    surfactant activity 3.0316E-7 2 4 2 6292
    iron ion transmembrane transporter activity 3.3348E-6 2 12 2 6292
    transition metal ion transmembrane transporter activity 1.9099E-5 2 28 2 6292
    di-, tri-valent inorganic cation transmembrane transporter activity 3.0063E-5 2 35 2 6292
    metal ion transmembrane transporter activity 5.2295E-5 2 46 2 6292
    obsolete_molecular_function 1.1854E-4 2 69 2 6292
    inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
    cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
    ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
    substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle