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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.925406451226]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

preribosome, small subunit precursor 7.579E-7 2 6 2 6292
preribosome 2.8346E-5 2 34 2 6292
Noc4p-Nop14p complex 6.3568E-4 2 2 1 6292
late endosome membrane 1.5888E-3 2 5 1 6292
Noc complex 1.5888E-3 2 5 1 6292
90S preribosome 5.3968E-3 2 17 1 6292
ribonucleoprotein complex 6.6615E-3 2 514 2 6292
late endosome 6.9813E-3 2 22 1 6292
endosomal part 7.2981E-3 2 23 1 6292
endosome membrane 7.2981E-3 2 23 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosomal small subunit biogenesis 1.6421E-5 2 26 2 6292
ribosomal small subunit export from nucleus 2.224E-3 2 7 1 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
establishment of ribosome localization 8.248E-3 2 26 1 6292
ribosome localization 8.248E-3 2 26 1 6292
ribosomal subunit export from nucleus 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle