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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.957740204018]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
PDR16
  • lipid particle
  • cytoplasm
  • microsome
    		•
  • response to drug
  • phospholipid transport
  • sterol biosynthetic process
    		•
  • phosphatidylinositol transporter activity
    		•
    SFH5
  • microsome
  • cytosol
    		•
  • phospholipid transport
    		•
  • phosphatidylinositol transporter activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    microsome 9.6001E-6 2 20 2 6292
    vesicular fraction 9.6001E-6 2 20 2 6292
    membrane fraction 2.0691E-4 2 91 2 6292
    insoluble fraction 2.0691E-4 2 91 2 6292
    cell fraction 4.1715E-4 2 129 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    phospholipid transport 3.3348E-6 2 12 2 6292
    lipid transport 3.3651E-5 2 37 2 6292
    lipid localization 3.744E-5 2 39 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    phosphatidylinositol transporter activity 5.0527E-7 2 5 2 6292
    phospholipid transporter activity 4.5979E-6 2 14 2 6292
    lipid transporter activity 8.6401E-6 2 19 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle