| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.00113935712] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| REV3 |
|
|
|
| REV7 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| zeta DNA polymerase complex | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| DNA polymerase complex | 2.2737E-6 | 2 | 10 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mutagenesis | 1.819E-6 | 2 | 9 | 2 | 6292 |
| obsolete_biological_process | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| DNA-directed DNA polymerase activity | 3.0291E-4 | 2 | 110 | 2 | 6292 |
| DNA polymerase activity | 3.312E-4 | 2 | 115 | 2 | 6292 |
| nucleotidyltransferase activity | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |