From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.03335813086] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
ILV2 |
|
|
|
ILV6 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
acetolactate synthase complex | 1.5158E-7 | 2 | 3 | 2 | 6292 |
nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
mitochondrial nucleoid | 8.248E-3 | 2 | 26 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
branched chain family amino acid biosynthetic process | 5.3053E-6 | 2 | 15 | 2 | 6292 |
branched chain family amino acid metabolic process | 7.7306E-6 | 2 | 18 | 2 | 6292 |
cellular amino acid biosynthetic process | 3.2544E-4 | 2 | 114 | 2 | 6292 |
amine biosynthetic process | 3.7294E-4 | 2 | 122 | 2 | 6292 |
organic acid biosynthetic process | 4.846E-4 | 2 | 139 | 2 | 6292 |
carboxylic acid biosynthetic process | 4.846E-4 | 2 | 139 | 2 | 6292 |
cellular amino acid metabolic process | 9.9543E-4 | 2 | 199 | 2 | 6292 |
cellular amine metabolic process | 1.2395E-3 | 2 | 222 | 2 | 6292 |
amine metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
cellular amino acid and derivative metabolic process | 1.4856E-3 | 2 | 243 | 2 | 6292 |
cellular nitrogen compound biosynthetic process | 1.5351E-3 | 2 | 247 | 2 | 6292 |
small molecule biosynthetic process | 2.42E-3 | 2 | 310 | 2 | 6292 |
organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
acetolactate synthase activity | 1.5158E-7 | 2 | 3 | 2 | 6292 |
transferase activity, transferring aldehyde or ketonic groups | 1.0611E-6 | 2 | 7 | 2 | 6292 |
FAD binding | 6.3568E-4 | 2 | 2 | 1 | 6292 |
coenzyme binding | 1.2712E-3 | 2 | 4 | 1 | 6292 |
cofactor binding | 1.9064E-3 | 2 | 6 | 1 | 6292 |
adenyl nucleotide binding | 9.5139E-3 | 2 | 30 | 1 | 6292 |
purine nucleoside binding | 9.8303E-3 | 2 | 31 | 1 | 6292 |