| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.0368553536] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| PGU1 |
|
|
|
| SUC2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| extracellular region | 1.0611E-5 | 2 | 21 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cellular carbohydrate catabolic process | 1.2915E-4 | 2 | 72 | 2 | 6292 |
| carbohydrate catabolic process | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| pectin metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| sucrose catabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| pectin catabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| sucrose metabolic process | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| glycoside catabolic process | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| disaccharide catabolic process | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| oligosaccharide catabolic process | 2.224E-3 | 2 | 7 | 1 | 6292 |
| cellular polysaccharide catabolic process | 2.859E-3 | 2 | 9 | 1 | 6292 |
| glycoside metabolic process | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| polysaccharide catabolic process | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| disaccharide metabolic process | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| catabolic process | 6.2027E-3 | 2 | 496 | 2 | 6292 |
| oligosaccharide metabolic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| hydrolase activity, hydrolyzing O-glycosyl compounds | 3.3651E-5 | 2 | 37 | 2 | 6292 |
| hydrolase activity, acting on glycosyl bonds | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| polygalacturonase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| beta-fructofuranosidase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |