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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.10252534562]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
SHO1
  • mating projection tip
  • plasma membrane
    		•
  • pseudohyphal growth
  • osmosensory signaling pathway via Sho1 osmosensor
    		•
  • osmosensor activity
    		•
    SLN1
  • plasma membrane
    		•
  • osmosensory signaling pathway via two-component system
  • response to hydrogen peroxide
  • protein amino acid phosphorylation
    		•
  • two-component sensor activity
  • osmosensor activity
  • protein histidine kinase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    plasma membrane 1.8077E-3 2 268 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    osmosensory signaling pathway 1.0611E-5 2 21 2 6292
    cellular response to abiotic stimulus 1.1672E-5 2 22 2 6292
    cellular response to osmotic stress 1.1672E-5 2 22 2 6292
    response to osmotic stress 1.4784E-4 2 77 2 6292
    response to abiotic stimulus 3.4287E-4 2 117 2 6292
    signaling pathway 8.5067E-4 2 184 2 6292
    osmosensory signaling pathway via two-component system 9.5344E-4 2 3 1 6292
    osmosensory signaling pathway via Sho1 osmosensor 9.5344E-4 2 3 1 6292
    two-component signal transduction system (phosphorelay) 9.5344E-4 2 3 1 6292
    response to hydrogen peroxide 1.2712E-3 2 4 1 6292
    signaling 1.598E-3 2 252 2 6292
    cellular response to stress 2.1173E-3 2 290 2 6292
    cellular response to stimulus 3.6193E-3 2 379 2 6292
    response to reactive oxygen species 4.1283E-3 2 13 1 6292
    response to stress 6.2277E-3 2 497 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    osmosensor activity 1.5158E-7 2 3 2 6292
    transmembrane receptor activity 2.779E-6 2 11 2 6292
    receptor activity 4.5979E-6 2 14 2 6292
    molecular transducer activity 1.5966E-4 2 80 2 6292
    signal transducer activity 1.5966E-4 2 80 2 6292
    protein histidine kinase activity 3.1786E-4 2 1 1 6292
    two-component sensor activity 3.1786E-4 2 1 1 6292
    phosphotransferase activity, nitrogenous group as acceptor 3.1786E-4 2 1 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle