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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.13066283086]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ADK1
  • mitochondrial intermembrane space
  • cytoplasm
  • mitochondrion
    		•
  • ADP biosynthetic process
  • nucleotide metabolic process
    		•
  • adenylate kinase activity
    		•
    YNK1
  • mitochondrial intermembrane space
  • mitochondrion
  • cytosol
    		•
  • RNA metabolic process
  • purine nucleotide biosynthetic process
  • nucleoside triphosphate biosynthetic process
  • nucleoside diphosphate phosphorylation
  • DNA metabolic process
  • nucleotide metabolic process
    		•
  • nucleoside diphosphate kinase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial intermembrane space 3.1832E-5 2 36 2 6292
    organelle envelope lumen 3.9411E-5 2 40 2 6292
    mitochondrial envelope 2.4514E-3 2 312 2 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    organelle envelope 6.43E-3 2 505 2 6292
    envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    nucleoside diphosphate metabolic process 1.5158E-7 2 3 2 6292
    purine nucleotide biosynthetic process 5.9419E-5 2 49 2 6292
    purine nucleotide metabolic process 8.3521E-5 2 58 2 6292
    nucleotide biosynthetic process 1.2202E-4 2 70 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.0236E-4 2 90 2 6292
    nucleobase, nucleoside and nucleotide biosynthetic process 2.0236E-4 2 90 2 6292
    nucleotide phosphorylation 3.1786E-4 2 1 1 6292
    nucleoside diphosphate phosphorylation 3.1786E-4 2 1 1 6292
    ADP biosynthetic process 3.1786E-4 2 1 1 6292
    ADP metabolic process 3.1786E-4 2 1 1 6292
    purine nucleoside diphosphate biosynthetic process 3.1786E-4 2 1 1 6292
    purine ribonucleoside diphosphate metabolic process 3.1786E-4 2 1 1 6292
    purine nucleoside diphosphate metabolic process 3.1786E-4 2 1 1 6292
    ribonucleoside diphosphate metabolic process 3.1786E-4 2 1 1 6292
    ribonucleoside diphosphate biosynthetic process 3.1786E-4 2 1 1 6292
    purine ribonucleoside diphosphate biosynthetic process 3.1786E-4 2 1 1 6292
    nucleotide metabolic process 4.1068E-4 2 128 2 6292
    nucleoside phosphate metabolic process 4.1068E-4 2 128 2 6292
    nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
    nucleoside diphosphate biosynthetic process 6.3568E-4 2 2 1 6292
    heterocycle metabolic process 7.3441E-4 2 171 2 6292
    cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
    small molecule biosynthetic process 2.42E-3 2 310 2 6292
    nucleoside triphosphate biosynthetic process 8.5646E-3 2 27 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    phosphotransferase activity, phosphate group as acceptor 2.779E-6 2 11 2 6292
    nucleobase, nucleoside, nucleotide kinase activity 3.3348E-6 2 12 2 6292
    nucleoside diphosphate kinase activity 3.1786E-4 2 1 1 6292
    kinase activity 1.2395E-3 2 222 2 6292
    adenylate kinase activity 1.2712E-3 2 4 1 6292
    nucleotide kinase activity 1.9064E-3 2 6 1 6292
    transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle