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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.15615646367]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein kinase CK2 complex 3.0316E-7 2 4 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

regulation of transcription from RNA polymerase I promoter 3.0316E-7 2 4 2 6292
regulation of transcription from RNA polymerase III promoter 1.0611E-6 2 7 2 6292
flocculation via cell wall protein-carbohydrate interaction 2.2737E-6 2 10 2 6292
flocculation 2.779E-6 2 11 2 6292
G2/M transition of mitotic cell cycle 2.0514E-5 2 29 2 6292
transcription from RNA polymerase I promoter 2.1979E-5 2 30 2 6292
transcription from RNA polymerase III promoter 3.552E-5 2 38 2 6292
G1/S transition of mitotic cell cycle 6.1895E-5 2 50 2 6292
interphase of mitotic cell cycle 2.3525E-4 2 97 2 6292
interphase 2.3525E-4 2 97 2 6292
protein amino acid phosphorylation 2.6542E-4 2 103 2 6292
cellular chemical homeostasis 3.5475E-4 2 119 2 6292
cellular ion homeostasis 3.5475E-4 2 119 2 6292
cellular homeostasis 3.6076E-4 2 120 2 6292
chemical homeostasis 3.791E-4 2 123 2 6292
ion homeostasis 3.791E-4 2 123 2 6292
multi-organism process 5.13E-4 2 143 2 6292
phosphorylation 8.0494E-4 2 179 2 6292
phosphorus metabolic process 1.3191E-3 2 229 2 6292
phosphate metabolic process 1.3191E-3 2 229 2 6292
response to DNA damage stimulus 1.4011E-3 2 236 2 6292
mitotic cell cycle 1.6363E-3 2 255 2 6292
cellular response to stress 2.1173E-3 2 290 2 6292
post-translational protein modification 3.2108E-3 2 357 2 6292
regulation of transcription, DNA-dependent 3.2288E-3 2 358 2 6292
regulation of RNA metabolic process 3.3198E-3 2 363 2 6292
cell cycle phase 3.5621E-3 2 376 2 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
regulation of transcription 3.7155E-3 2 384 2 6292
homeostatic process 4.1951E-3 2 408 2 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.3405E-3 2 415 2 6292
regulation of nitrogen compound metabolic process 4.3615E-3 2 416 2 6292
regulation of gene expression 4.9915E-3 2 445 2 6292
regulation of macromolecule biosynthetic process 5.2416E-3 2 456 2 6292
regulation of cellular biosynthetic process 5.6164E-3 2 472 2 6292
regulation of biosynthetic process 5.6402E-3 2 473 2 6292
regulation of macromolecule metabolic process 6.004E-3 2 488 2 6292
cell cycle process 6.0534E-3 2 490 2 6292
response to stress 6.2277E-3 2 497 2 6292
protein modification process 6.278E-3 2 499 2 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
regulation of primary metabolic process 6.6615E-3 2 514 2 6292
cell cycle 6.95E-3 2 525 2 6292
regulation of cellular metabolic process 7.2445E-3 2 536 2 6292
regulation of metabolic process 7.5452E-3 2 547 2 6292
regulation of biological quality 7.6561E-3 2 551 2 6292
transcription 7.6839E-3 2 552 2 6292
macromolecule modification 8.1649E-3 2 569 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein kinase CK2 activity 5.0527E-8 2 2 2 6292
obsolete_molecular_function 1.1854E-4 2 69 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle