| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.33286736243] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cell wall-bounded periplasmic space | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| periplasmic space | 1.0611E-6 | 2 | 7 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| phosphorus metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| phosphate metabolic process | 1.3191E-3 | 2 | 229 | 2 | 6292 |
| cellular response to phosphate starvation | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| thiamin and derivative metabolic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| acid phosphatase activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| phosphatase activity | 1.8902E-4 | 2 | 87 | 2 | 6292 |
| phosphoric ester hydrolase activity | 2.6026E-4 | 2 | 102 | 2 | 6292 |
| nucleoside-triphosphate diphosphatase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| hydrolase activity, acting on ester bonds | 2.929E-3 | 2 | 341 | 2 | 6292 |