From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.33657714266] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
MMP1 |
|
|
|
SAM3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
sulfur amino acid transport | 5.0527E-7 | 2 | 5 | 2 | 6292 |
amino acid transport | 3.9411E-5 | 2 | 40 | 2 | 6292 |
amine transport | 6.9626E-5 | 2 | 53 | 2 | 6292 |
carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
S-methylmethionine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
S-adenosylmethionine transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
spermidine transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
putrescine transport | 9.5344E-4 | 2 | 3 | 1 | 6292 |
polyamine transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.