| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.89927030386] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| HOP1 |
|
|
|
| RED1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| lateral element | 5.0527E-8 | 2 | 2 | 2 | 6292 |
| synaptonemal complex | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| condensed nuclear chromosome | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| condensed chromosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| synaptonemal complex assembly | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| synaptonemal complex organization | 1.0611E-6 | 2 | 7 | 2 | 6292 |
| chromosome organization involved in meiosis | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| synapsis | 3.9411E-6 | 2 | 13 | 2 | 6292 |
| meiosis I | 1.5567E-4 | 2 | 79 | 2 | 6292 |
| prophase | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| meiotic cell cycle checkpoint | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| meiotic prophase I | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| meiotic recombination checkpoint | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| M phase of meiotic cell cycle | 6.427E-4 | 2 | 160 | 2 | 6292 |
| meiosis | 6.427E-4 | 2 | 160 | 2 | 6292 |
| meiotic cell cycle | 6.7534E-4 | 2 | 164 | 2 | 6292 |
| M phase | 2.1762E-3 | 2 | 294 | 2 | 6292 |
| negative regulation of meiosis | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| cell cycle phase | 3.5621E-3 | 2 | 376 | 2 | 6292 |
| cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
| positive regulation of molecular function | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| positive regulation of catalytic activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| cell cycle process | 6.0534E-3 | 2 | 490 | 2 | 6292 |
| cell cycle | 6.95E-3 | 2 | 525 | 2 | 6292 |
| regulation of meiotic cell cycle | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| regulation of meiosis | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| structure-specific DNA binding | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| four-way junction DNA binding | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| chromatin DNA binding | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| DNA secondary structure binding | 2.859E-3 | 2 | 9 | 1 | 6292 |