| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.687442183794] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| histone acetyltransferase complex | 4.7798E-5 | 2 | 44 | 2 | 6292 |
| transcription factor TFIIF complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| Ino80 complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| DNA helicase complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| SWI/SNF-type complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| SWI/SNF complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| transcription factor TFIID complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
| SAGA complex | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| SAGA-type complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| chromatin modification | 7.0879E-4 | 2 | 168 | 2 | 6292 |
| chromatin organization | 1.036E-3 | 2 | 203 | 2 | 6292 |
| regulation of transcription involved in G1 phase of mitotic cell cycle | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
| G1 phase of mitotic cell cycle | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G1 phase | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |