From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 1.02013214937] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
HOPS complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
extrinsic to vacuolar membrane | 6.3568E-4 | 2 | 2 | 1 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
extrinsic to organelle membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Golgi to endosome transport | 2.779E-6 | 2 | 11 | 2 | 6292 |
vesicle docking during exocytosis | 3.3348E-6 | 2 | 12 | 2 | 6292 |
membrane docking | 4.5979E-6 | 2 | 14 | 2 | 6292 |
vesicle docking | 4.5979E-6 | 2 | 14 | 2 | 6292 |
late endosome to vacuole transport | 1.3945E-5 | 2 | 24 | 2 | 6292 |
vacuole fusion, non-autophagic | 1.7735E-5 | 2 | 27 | 2 | 6292 |
exocytosis | 5.2295E-5 | 2 | 46 | 2 | 6292 |
vacuole organization | 5.2295E-5 | 2 | 46 | 2 | 6292 |
endosome transport | 6.6999E-5 | 2 | 52 | 2 | 6292 |
secretion | 7.2304E-5 | 2 | 54 | 2 | 6292 |
secretion by cell | 7.2304E-5 | 2 | 54 | 2 | 6292 |
membrane fusion | 1.1171E-4 | 2 | 67 | 2 | 6292 |
cellular membrane fusion | 1.1171E-4 | 2 | 67 | 2 | 6292 |
post-Golgi vesicle-mediated transport | 1.151E-4 | 2 | 68 | 2 | 6292 |
vacuolar transport | 3.312E-4 | 2 | 115 | 2 | 6292 |
Golgi vesicle transport | 7.0879E-4 | 2 | 168 | 2 | 6292 |
cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |