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View Protein Complex Details

Complex Overview

From Publication: Noble WS, et al. (2009) Manuscript in preparation.
Notes: Predicted to be cocomplexed based on PDB structures 1R5TA and 3FWBC with confidence: 0.989995527752
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

SAGA complex 6.9813E-3 2 22 1 6292
SAGA-type complex 7.2981E-3 2 23 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytidine catabolic process 3.1786E-4 2 1 1 6292
deoxyribonucleoside catabolic process 3.1786E-4 2 1 1 6292
pyrimidine deoxyribonucleoside catabolic process 3.1786E-4 2 1 1 6292
pyrimidine ribonucleoside catabolic process 3.1786E-4 2 1 1 6292
deoxycytidine metabolic process 3.1786E-4 2 1 1 6292
ribonucleoside catabolic process 3.1786E-4 2 1 1 6292
deoxycytidine catabolic process 3.1786E-4 2 1 1 6292
cytidine metabolic process 6.3568E-4 2 2 1 6292
pyrimidine deoxyribonucleoside metabolic process 9.5344E-4 2 3 1 6292
pyrimidine nucleoside catabolic process 9.5344E-4 2 3 1 6292
deoxyribonucleoside metabolic process 9.5344E-4 2 3 1 6292
pyrimidine ribonucleoside metabolic process 1.2712E-3 2 4 1 6292
nucleoside catabolic process 1.5888E-3 2 5 1 6292
pyrimidine salvage 2.224E-3 2 7 1 6292
pyrimidine nucleoside metabolic process 2.5415E-3 2 8 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid catabolic process 4.7627E-3 2 15 1 6292
nucleobase, nucleoside and nucleotide catabolic process 4.7627E-3 2 15 1 6292
ribonucleoside metabolic process 6.0308E-3 2 19 1 6292
cellular metabolic compound salvage 6.9813E-3 2 22 1 6292
cellular nitrogen compound catabolic process 7.6148E-3 2 24 1 6292
nucleoside metabolic process 8.248E-3 2 26 1 6292
heterocycle catabolic process 8.248E-3 2 26 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytidine deaminase activity 3.1786E-4 2 1 1 6292
deaminase activity 4.4455E-3 2 14 1 6292
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 7.2981E-3 2 23 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle