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View Protein Complex Details

Complex Overview

From Publication: Gavin A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature. 2006 Mar 30;440(7084):631-6. Epub 2006 Jan 22.
Notes: From the published set of protein complexes (core proteins only)
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

oligosaccharyltransferase complex 3.2188E-12 4 10 4 6292
endoplasmic reticulum membrane 1.9094E-7 4 133 4 6292
endoplasmic reticulum part 3.1054E-7 4 150 4 6292
subsynaptic reticulum 3.1054E-7 4 150 4 6292
nuclear membrane-endoplasmic reticulum network 1.8027E-6 4 232 4 6292
endoplasmic reticulum 1.1028E-5 4 364 4 6292
endomembrane system 1.5784E-5 4 398 4 6292
membrane part 1.2155E-4 4 662 4 6292
organelle membrane 1.4518E-4 4 692 4 6292
protein complex 1.0617E-3 4 1137 4 6292
membrane 1.3089E-3 4 1198 4 6292
macromolecular complex 4.5471E-3 4 1635 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein amino acid N-linked glycosylation 3.2475E-9 4 49 4 6292
protein amino acid glycosylation 1.863E-8 4 75 4 6292
glycosylation 1.863E-8 4 75 4 6292
macromolecule glycosylation 1.863E-8 4 75 4 6292
glycoprotein biosynthetic process 2.5501E-8 4 81 4 6292
glycoprotein metabolic process 2.8166E-8 4 83 4 6292
cellular carbohydrate metabolic process 2.9409E-6 4 262 4 6292
carbohydrate metabolic process 3.8974E-6 4 281 4 6292
protein modification process 3.9123E-5 4 499 4 6292
macromolecule modification 6.624E-5 4 569 4 6292
cellular protein metabolic process 8.4498E-4 4 1074 4 6292
protein metabolic process 1.058E-3 4 1136 4 6292
cellular macromolecule biosynthetic process 1.2614E-3 4 1187 4 6292
macromolecule biosynthetic process 1.27E-3 4 1189 4 6292
peptidyl-asparagine modification 1.2712E-3 4 2 1 6292
protein amino acid N-linked glycosylation via asparagine 1.2712E-3 4 2 1 6292
cellular biosynthetic process 3.8359E-3 4 1567 4 6292
biosynthetic process 4.1907E-3 4 1602 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

dolichyl-diphosphooligosaccharide-protein glycotransferase activity 3.2188E-12 4 10 4 6292
oligosaccharyl transferase activity 3.2188E-12 4 10 4 6292
transferase activity, transferring hexosyl groups 2.4242E-8 4 80 4 6292
transferase activity, transferring glycosyl groups 7.0478E-8 4 104 4 6292
transferase activity 2.5575E-4 4 797 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle