| From Publication: | Mewes, H. W. et al. MIPS: Analysis and annotation of proteins from whole genomes. Nucleic Acids Res. 32, D41-D44 |
| Notes: | MIPS hand-curated complex set. MIPS complex ID: 510.90 |
| Complex Size: | 3 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription factor TFIIF complex | 2.4099E-11 | 3 | 3 | 3 | 6292 |
| DNA-directed RNA polymerase II, holoenzyme | 6.6801E-7 | 3 | 56 | 3 | 6292 |
| transcription factor complex | 1.3774E-6 | 3 | 71 | 3 | 6292 |
| nucleoplasm part | 5.8345E-5 | 3 | 245 | 3 | 6292 |
| nucleoplasm | 7.3064E-5 | 3 | 264 | 3 | 6292 |
| nuclear lumen | 3.709E-4 | 3 | 453 | 3 | 6292 |
| organelle lumen | 1.1495E-3 | 3 | 660 | 3 | 6292 |
| intracellular organelle lumen | 1.1495E-3 | 3 | 660 | 3 | 6292 |
| membrane-enclosed lumen | 1.3717E-3 | 3 | 700 | 3 | 6292 |
| Ino80 complex | 5.2364E-3 | 3 | 11 | 1 | 6292 |
| DNA helicase complex | 5.2364E-3 | 3 | 11 | 1 | 6292 |
| nuclear part | 5.3751E-3 | 3 | 1103 | 3 | 6292 |
| protein complex | 5.8881E-3 | 3 | 1137 | 3 | 6292 |
| SWI/SNF-type complex | 6.1865E-3 | 3 | 13 | 1 | 6292 |
| SWI/SNF complex | 6.1865E-3 | 3 | 13 | 1 | 6292 |
| transcription factor TFIID complex | 7.136E-3 | 3 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription initiation from RNA polymerase II promoter | 3.9076E-7 | 3 | 47 | 3 | 6292 |
| transcription initiation | 7.4359E-7 | 3 | 58 | 3 | 6292 |
| protein complex biogenesis | 1.4668E-5 | 3 | 155 | 3 | 6292 |
| protein complex assembly | 1.4668E-5 | 3 | 155 | 3 | 6292 |
| macromolecular complex assembly | 8.8168E-5 | 3 | 281 | 3 | 6292 |
| transcription from RNA polymerase II promoter | 1.4965E-4 | 3 | 335 | 3 | 6292 |
| macromolecular complex subunit organization | 1.8121E-4 | 3 | 357 | 3 | 6292 |
| cellular component assembly | 2.2742E-4 | 3 | 385 | 3 | 6292 |
| transcription, DNA-dependent | 5.081E-4 | 3 | 503 | 3 | 6292 |
| RNA biosynthetic process | 5.2344E-4 | 3 | 508 | 3 | 6292 |
| transcription | 6.7188E-4 | 3 | 552 | 3 | 6292 |
| cellular component biogenesis | 1.3367E-3 | 3 | 694 | 3 | 6292 |
| RNA metabolic process | 3.4763E-3 | 3 | 954 | 3 | 6292 |
| regulation of transcription involved in G1 phase of mitotic cell cycle | 6.6614E-3 | 3 | 14 | 1 | 6292 |
| cellular macromolecule biosynthetic process | 6.7003E-3 | 3 | 1187 | 3 | 6292 |
| macromolecule biosynthetic process | 6.7343E-3 | 3 | 1189 | 3 | 6292 |
| gene expression | 8.4626E-3 | 3 | 1283 | 3 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| general RNA polymerase II transcription factor activity | 1.004E-6 | 3 | 64 | 3 | 6292 |
| RNA polymerase II transcription factor activity | 8.6215E-6 | 3 | 130 | 3 | 6292 |
| transcription regulator activity | 1.5509E-4 | 3 | 339 | 3 | 6292 |