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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 3.8456E-4 3 72 2 6292
nuclear outer membrane 5.4909E-4 3 86 2 6292
nuclear membrane 6.9865E-4 3 97 2 6292
box H/ACA snoRNP complex 9.5344E-4 3 2 1 6292
outer membrane 2.3433E-3 3 178 2 6292
organelle outer membrane 2.3433E-3 3 178 2 6292
nuclear envelope 2.9239E-3 3 199 2 6292
nucleolus 3.2839E-3 3 211 2 6292
nuclear membrane-endoplasmic reticulum network 3.9627E-3 3 232 2 6292
nuclear part 5.3751E-3 3 1103 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.6493E-4 3 346 3 6292
ribonucleoprotein complex biogenesis 2.0843E-4 3 374 3 6292
cellular component biogenesis 1.3367E-3 3 694 3 6292
rRNA pseudouridine synthesis 1.9063E-3 3 4 1 6292
pseudouridine synthesis 4.2857E-3 3 9 1 6292
rRNA modification 8.5592E-3 3 18 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 9.7865E-3 3 367 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle