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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin assembly complex 2.1184E-8 4 12 3 6292
HIR complex 3.0297E-6 4 5 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA replication-independent nucleosome assembly 1.9272E-9 4 6 3 6292
DNA replication-independent nucleosome organization 1.9272E-9 4 6 3 6292
nucleosome assembly 5.3897E-8 4 16 3 6292
chromatin assembly 9.3228E-8 4 19 3 6292
nucleosome organization 3.5113E-7 4 29 3 6292
DNA packaging 4.7646E-7 4 32 3 6292
chromatin assembly or disassembly 6.2849E-7 4 35 3 6292
protein-DNA complex assembly 8.7717E-7 4 39 3 6292
DNA conformation change 2.9548E-6 4 58 3 6292
cellular macromolecular complex assembly 9.3229E-5 4 182 3 6292
chromatin organization 1.2926E-4 4 203 3 6292
RNA elongation from RNA polymerase II promoter 2.2288E-4 4 39 2 6292
cellular macromolecular complex subunit organization 2.6748E-4 4 259 3 6292
RNA elongation 2.974E-4 4 45 2 6292
macromolecular complex assembly 3.4098E-4 4 281 3 6292
nucleosome disassembly 6.3573E-4 4 1 1 6292
DNA replication-dependent nucleosome assembly 6.3573E-4 4 1 1 6292
DNA replication-dependent nucleosome organization 6.3573E-4 4 1 1 6292
chromatin disassembly 6.3573E-4 4 1 1 6292
protein-DNA complex disassembly 6.3573E-4 4 1 1 6292
macromolecular complex subunit organization 6.9425E-4 4 357 3 6292
regulation of transcription, DNA-dependent 7.0003E-4 4 358 3 6292
regulation of RNA metabolic process 7.294E-4 4 363 3 6292
regulation of transcription 8.6159E-4 4 384 3 6292
cellular component assembly 8.6824E-4 4 385 3 6292
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 1.084E-3 4 415 3 6292
regulation of nitrogen compound metabolic process 1.0917E-3 4 416 3 6292
cellular macromolecule biosynthetic process 1.2614E-3 4 1187 4 6292
macromolecule biosynthetic process 1.27E-3 4 1189 4 6292
deoxyribonucleoside triphosphate biosynthetic process 1.2712E-3 4 2 1 6292
regulation of gene expression 1.3321E-3 4 445 3 6292
regulation of macromolecule biosynthetic process 1.4316E-3 4 456 3 6292
regulation of cellular biosynthetic process 1.5848E-3 4 472 3 6292
regulation of biosynthetic process 1.5947E-3 4 473 3 6292
regulation of macromolecule metabolic process 1.7483E-3 4 488 3 6292
transcription, DNA-dependent 1.9112E-3 4 503 3 6292
RNA biosynthetic process 1.9676E-3 4 508 3 6292
regulation of primary metabolic process 2.0368E-3 4 514 3 6292
regulation of cellular metabolic process 2.3038E-3 4 536 3 6292
regulation of metabolic process 2.4454E-3 4 547 3 6292
transcription 2.5116E-3 4 552 3 6292
deoxyribonucleoside triphosphate metabolic process 2.5411E-3 4 4 1 6292
deoxyribonucleotide biosynthetic process 2.5411E-3 4 4 1 6292
nucleic acid metabolic process 2.5494E-3 4 1415 4 6292
chromosome organization 2.5518E-3 4 555 3 6292
deoxyribonucleotide metabolic process 3.8098E-3 4 6 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 3.8261E-3 4 1566 4 6292
cellular biosynthetic process 3.8359E-3 4 1567 4 6292
biosynthetic process 4.1907E-3 4 1602 4 6292
cellular component biogenesis 4.9063E-3 4 694 3 6292
cellular nitrogen compound metabolic process 6.2471E-3 4 1770 4 6292
nitrogen compound metabolic process 6.5492E-3 4 1791 4 6292
regulation of cellular process 7.309E-3 4 796 3 6292
regulation of transcription from RNA polymerase II promoter 7.4744E-3 4 228 2 6292
regulation of biological process 8.0789E-3 4 824 3 6292
regulation of transcription involved in G1/S-phase of mitotic cell cycle 8.8726E-3 4 14 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein serine/threonine/tyrosine kinase activity 4.4437E-3 4 7 1 6292
DNA replication origin binding 8.2408E-3 4 13 1 6292
histone binding 8.8726E-3 4 14 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle