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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic large ribosomal subunit 2.8086E-5 7 60 3 6292
cytosolic ribosome 1.3411E-4 7 101 3 6292
large ribosomal subunit 1.7293E-4 7 110 3 6292
cytosolic part 2.352E-4 7 122 3 6292
ribosomal subunit 7.7712E-4 7 183 3 6292
ribonucleoprotein complex 1.2617E-3 7 514 4 6292
nucleotide-excision repair factor 2 complex 2.224E-3 7 2 1 6292
cytosol 2.7813E-3 7 284 3 6292
ribosome 2.9533E-3 7 290 3 6292
repairosome 4.4437E-3 7 4 1 6292
membrane raft 8.8705E-3 7 8 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

translation 1.411E-5 7 376 5 6292
ribosomal subunit assembly 1.532E-3 7 55 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
cellular protein metabolic process 2.2261E-3 7 1074 5 6292
organelle assembly 2.4022E-3 7 69 2 6292
protein metabolic process 2.8929E-3 7 1136 5 6292
cellular macromolecule biosynthetic process 3.5479E-3 7 1187 5 6292
macromolecule biosynthetic process 3.5757E-3 7 1189 5 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292
gene expression 5.0816E-3 7 1283 5 6292
nucleotide-excision repair, DNA damage recognition 7.7654E-3 7 7 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 8.2387E-7 7 212 5 6292
structural molecule activity 8.4682E-6 7 339 5 6292
hydrogen-exporting ATPase activity, phosphorylative mechanism 2.224E-3 7 2 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle