YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U5 snRNP 1.4623E-13 6 14 5 6292
small nuclear ribonucleoprotein complex 5.1005E-10 6 63 5 6292
U4/U6 x U5 tri-snRNP complex 8.2088E-9 6 32 4 6292
ribonucleoprotein complex 2.8931E-7 6 514 6 6292
nuclear part 2.8697E-5 6 1103 6 6292
macromolecular complex 3.0579E-4 6 1635 6 6292
nucleus 1.1592E-3 6 2041 6 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear mRNA splicing, via spliceosome 5.1651E-9 6 99 5 6292
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.4362E-9 6 100 5 6292
RNA splicing, via transesterification reactions 7.6689E-9 6 107 5 6292
RNA splicing 2.2239E-8 6 132 5 6292
mRNA processing 5.1717E-8 6 156 5 6292
mRNA metabolic process 2.4781E-7 6 213 5 6292
ribonucleoprotein complex assembly 6.2811E-7 6 92 4 6292
RNA processing 4.4689E-6 6 380 5 6292
cellular macromolecular complex assembly 9.7127E-6 6 182 4 6292
spliceosomal conformational changes to generate catalytic conformation 2.7204E-5 6 9 2 6292
cellular macromolecular complex subunit organization 3.9429E-5 6 259 4 6292
macromolecular complex assembly 5.4416E-5 6 281 4 6292
macromolecular complex subunit organization 1.3958E-4 6 357 4 6292
ribonucleoprotein complex biogenesis 1.675E-4 6 374 4 6292
cellular component assembly 1.8763E-4 6 385 4 6292
RNA metabolic process 4.1658E-4 6 954 5 6292
auxin biosynthetic process 9.5359E-4 6 1 1 6292
auxin metabolic process 9.5359E-4 6 1 1 6292
regulation of hormone levels 9.5359E-4 6 1 1 6292
hormone metabolic process 9.5359E-4 6 1 1 6292
hormone biosynthetic process 9.5359E-4 6 1 1 6292
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) 9.5359E-4 6 1 1 6292
gene expression 1.746E-3 6 1283 5 6292
cellular component biogenesis 1.8339E-3 6 694 4 6292
nuclear mRNA 3'-splice site recognition 1.9064E-3 6 2 1 6292
assembly of spliceosomal tri-snRNP 1.9064E-3 6 2 1 6292
spliceosomal snRNP assembly 1.9064E-3 6 2 1 6292
nucleic acid metabolic process 2.791E-3 6 1415 5 6292
generation of catalytic spliceosome for first transesterification step 2.8585E-3 6 3 1 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.5228E-3 6 1566 5 6292
mRNA splice site selection 5.7102E-3 6 6 1 6292
cellular nitrogen compound metabolic process 8.0643E-3 6 1770 5 6292
nitrogen compound metabolic process 8.5237E-3 6 1791 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

U5 snRNA binding 7.579E-7 6 2 2 6292
snRNA binding 7.5694E-6 6 5 2 6292
RNA binding 3.4488E-3 6 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle