From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.439864874227] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
CTR3 |
|
|
|
QDR1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
integral to plasma membrane | 2.0514E-5 | 2 | 29 | 2 | 6292 |
intrinsic to plasma membrane | 2.6678E-5 | 2 | 33 | 2 | 6292 |
plasma membrane part | 8.0641E-5 | 2 | 57 | 2 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transmembrane transport | 1.7194E-4 | 2 | 83 | 2 | 6292 |
copper ion transmembrane transport | 1.9064E-3 | 2 | 6 | 1 | 6292 |
copper ion import | 1.9064E-3 | 2 | 6 | 1 | 6292 |
drug transmembrane transport | 2.5415E-3 | 2 | 8 | 1 | 6292 |
copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
drug transport | 4.1283E-3 | 2 | 13 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
copper uptake transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
copper ion transmembrane transporter activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
drug transmembrane transporter activity | 4.4455E-3 | 2 | 14 | 1 | 6292 |
transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |