From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.456098587043] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
SMF3 |
|
|
|
VCX1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
di-, tri-valent inorganic cation transmembrane transporter activity | 3.0063E-5 | 2 | 35 | 2 | 6292 |
metal ion transmembrane transporter activity | 5.2295E-5 | 2 | 46 | 2 | 6292 |
inorganic cation transmembrane transporter activity | 2.5516E-4 | 2 | 101 | 2 | 6292 |
cation transmembrane transporter activity | 3.4879E-4 | 2 | 118 | 2 | 6292 |
ion transmembrane transporter activity | 5.3483E-4 | 2 | 146 | 2 | 6292 |
calcium ion transmembrane transporter activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
substrate-specific transmembrane transporter activity | 1.7943E-3 | 2 | 267 | 2 | 6292 |
transmembrane transporter activity | 2.3578E-3 | 2 | 306 | 2 | 6292 |
substrate-specific transporter activity | 2.8436E-3 | 2 | 336 | 2 | 6292 |
iron ion transmembrane transporter activity | 3.811E-3 | 2 | 12 | 1 | 6292 |
transporter activity | 4.1132E-3 | 2 | 404 | 2 | 6292 |
transition metal ion transmembrane transporter activity | 8.8811E-3 | 2 | 28 | 1 | 6292 |