From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.464277833811] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
OSH2 |
|
|
|
SWH1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Golgi trans cisterna | 1.5888E-3 | 2 | 5 | 1 | 6292 |
early endosome | 1.5888E-3 | 2 | 5 | 1 | 6292 |
endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
Golgi stack | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Golgi cisterna | 5.0798E-3 | 2 | 16 | 1 | 6292 |
organelle subcompartment | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
sterol transport | 6.8716E-6 | 2 | 17 | 2 | 6292 |
lipid transport | 3.3651E-5 | 2 | 37 | 2 | 6292 |
lipid localization | 3.744E-5 | 2 | 39 | 2 | 6292 |
exocytosis | 5.2295E-5 | 2 | 46 | 2 | 6292 |
secretion | 7.2304E-5 | 2 | 54 | 2 | 6292 |
secretion by cell | 7.2304E-5 | 2 | 54 | 2 | 6292 |
endocytosis | 1.9342E-4 | 2 | 88 | 2 | 6292 |
membrane invagination | 2.2085E-4 | 2 | 94 | 2 | 6292 |
membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
sterol binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
oxysterol binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
steroid binding | 1.819E-6 | 2 | 9 | 2 | 6292 |
phosphatidylinositol binding | 2.2737E-6 | 2 | 10 | 2 | 6292 |
phosphoinositide binding | 3.3651E-5 | 2 | 37 | 2 | 6292 |
phospholipid binding | 4.5626E-5 | 2 | 43 | 2 | 6292 |
lipid binding | 6.1895E-5 | 2 | 50 | 2 | 6292 |